PDBsum entry 5b3z Go to PDB code:  Pore analysis for: 5b3z calculated with MOLE 2.0 PDB id 5b3z Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.99 2.09 30.8 -0.46 -0.52 3.8 96 1 0 6 5 0 1 0   2 2.07 2.15 33.8 -0.69 -0.56 4.6 92 2 1 6 5 0 2 0   3 2.12 2.12 36.8 -0.20 -0.43 2.0 96 0 0 6 6 1 1 0   4 1.35 2.94 37.2 -2.38 -0.42 25.4 84 4 5 4 1 2 0 0   5 1.06 1.06 49.0 -1.77 -0.59 18.5 89 5 4 5 3 3 0 0   6 1.98 2.10 55.5 -0.73 -0.37 5.6 91 2 1 9 5 1 2 0   7 1.95 1.95 60.7 -1.18 -0.65 11.0 93 3 3 7 6 0 1 0   8 1.19 1.32 61.4 -1.89 -0.58 17.5 85 7 5 10 2 4 2 0   9 1.91 3.35 75.5 -0.67 -0.35 9.3 90 4 4 8 7 2 2 0   10 1.67 3.43 83.8 -1.36 -0.38 17.4 86 6 7 6 5 2 1 0   11 2.34 2.40 88.0 -1.68 -0.48 17.7 88 10 5 6 5 1 0 0   12 1.88 2.22 93.3 -2.37 -0.60 24.6 80 14 10 6 3 3 2 0   13 1.97 1.96 111.8 -1.80 -0.68 16.8 86 9 6 11 4 0 3 0   14 1.84 2.15 112.6 -1.57 -0.46 17.0 82 10 8 6 6 5 2 0   15 2.57 2.64 119.5 -2.66 -0.53 28.8 82 15 12 6 5 3 2 0   16 2.30 2.36 135.3 -1.94 -0.47 21.9 83 13 13 6 7 4 2 0   17 1.93 2.17 157.9 -2.49 -0.54 26.6 79 18 18 6 5 7 4 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.