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PDBsum entry 5b31
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5b31 calculated with MOLE 2.0 PDB id
5b31
Pores calculated on whole structure Pores calculated excluding ligands
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13 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.50 2.49 28.7 -2.98 -0.47 38.3 83 4 0 1 1 0 0 0  DT 52 I DC 53 I DA 54 I DA 61 I DT 62 I DG 63 I
DC 69 I DT 70 I DG 71 I DA 72 I DA 73 I DT 74 I D
A 219 J DT 220 J DT 226 J DG 227 J DT 236 J DT
237 J
2 2.41 2.77 29.4 0.03 -0.26 6.5 88 2 0 2 1 1 0 0  DG 18 I DA 19 I DT 20 I DT 21 I DC 22 I DT 23 I
DC 195 J DG 267 J DA 270 J DG 271 J
3 3.21 3.36 29.9 -1.26 -0.73 14.1 90 3 1 2 1 0 0 0  DT 130 I DG 131 I DC 132 I DA 133 I MN 301 I DC
156 J DA 157 J DT 160 J DA 165 J
4 1.79 1.82 31.3 -0.96 -0.65 12.5 84 2 0 0 1 0 0 0  DG 59 I DT 130 I DG 131 I DC 132 I DA 133 I DG
134 I MN 301 I DT 154 J DC 155 J DC 156 J DA 157
J DT 160 J
5 2.63 3.32 35.6 -1.88 -0.54 20.0 90 4 0 4 1 0 0 0  DA 41 I DT 48 I DG 249 J DT 250 J
6 2.52 2.52 37.2 -2.05 -0.33 24.6 82 5 0 0 2 1 0 0  DA 30 I DG 31 I DT 32 I DT 36 I DA 113 I DC 114 I
DT 183 J DT 184 J DG 185 J DT 258 J DC 260 J DA
261 J DC 262 J
7 2.69 3.31 37.5 -2.23 -0.50 27.6 94 5 1 5 1 0 0 0  DT 38 I DT 48 I DA 113 I DA 175 J DG 249 J
8 2.80 2.80 37.9 -1.63 -0.67 18.9 74 4 0 0 0 0 0 0  DG 39 I DA 41 I DG 46 I DT 123 I DA 124 I DA 173
J DA 174 J DA 175 J DG 249 J DT 250 J DT 251 J
9 2.53 2.57 43.1 -1.99 -0.60 22.0 98 5 1 7 1 0 0 0  DT 38 I DA 113 I DG 121 I DT 123 I DT 167 J DC
168 J DT 169 J DA 175 J
10 1.91 1.90 45.6 -2.16 -0.67 21.3 77 4 1 1 0 0 1 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DT 154 J
DC 230 J DA 231 J DC 234 J DC 235 J DT 236 J
11 2.06 2.10 51.1 -1.97 -0.59 22.1 88 7 1 3 1 0 0 0  DG 18 I DA 102 I DA 110 I DA 187 J DC 195 J
12 1.93 3.08 55.3 -2.16 -0.28 24.1 81 7 2 6 2 5 0 0  DG 18 I DT 48 I DC 195 J
13 2.76 2.93 57.2 -1.79 -0.46 22.7 82 7 1 3 2 1 0 0  DG 18 I DA 28 I DT 36 I DA 113 I DC 114 I DT 183
J DT 184 J DG 185 J DC 195 J DC 260 J DA 261 J DC
262 J
14 2.56 2.56 61.1 -2.06 -0.39 26.0 81 7 1 3 3 2 0 0  DG 18 I DA 28 I DA 30 I DG 31 I DT 32 I DC 195 J
DT 258 J DC 260 J DA 261 J DC 262 J
15 2.06 2.11 63.6 -2.41 -0.59 28.3 85 8 1 1 0 0 0 0  DA 28 I DT 36 I DA 102 I DG 103 I DT 104 I DA 110
I DA 113 I DC 114 I DT 183 J DT 184 J DG 185 J DG
186 J DA 187 J DC 260 J DA 261 J DC 262 J
16 2.02 2.13 69.5 -1.53 -0.47 18.9 88 7 1 4 2 1 0 0  DT 20 I DT 21 I DC 22 I DT 23 I DA 102 I DA 110 I
DA 187 J DA 270 J
17 1.91 3.01 72.6 -1.71 -0.25 20.6 82 7 2 7 3 6 0 0  DT 20 I DT 21 I DC 22 I DT 23 I DT 48 I DA 270 J
18 2.02 2.15 73.3 -2.67 -0.46 31.2 82 9 1 0 2 1 0 0  DA 28 I DA 30 I DG 31 I DT 32 I DA 102 I DG 103 I
DT 104 I DA 110 I DG 186 J DA 187 J DT 258 J DC
260 J DA 261 J DC 262 J
19 2.66 2.65 74.4 -1.38 -0.39 18.9 83 7 1 4 3 2 0 0  DT 20 I DT 21 I DC 22 I DT 23 I DA 28 I DT 36 I D
A 113 I DC 114 I DT 183 J DT 184 J DG 185 J DC
260 J DA 261 J DC 262 J DA 270 J
20 2.59 2.59 78.3 -1.54 -0.32 20.9 82 7 1 4 4 3 0 0  DT 20 I DT 21 I DC 22 I DT 23 I DA 28 I DA 30 I
DG 31 I DT 32 I DT 258 J DC 260 J DA 261 J DC 262
J DA 270 J
21 2.10 2.11 89.2 -2.08 -0.44 28.6 76 7 1 1 2 0 1 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DT 64 I
DC 69 I DT 70 I DG 71 I DA 72 I DA 73 I DT 74 I
DG 134 I DT 154 J DA 219 J DT 220 J DT 226 J DG
227 J DC 230 J DA 231 J
22 2.36 2.41 94.8 -1.76 -0.52 22.6 76 7 1 2 2 1 0 0  DA 61 I DT 62 I DG 63 I DC 69 I DT 70 I DG 71 I D
A 72 I DA 73 I DT 74 I DA 219 J DT 220 J DT 226 J
DG 227 J DC 234 J DC 235 J DT 236 J
23 1.94 1.94 113.1 -1.79 -0.57 23.3 79 8 2 3 2 1 0 0  DA 7 I DT 8 I DG 18 I DC 69 I DC 79 I DT 80 I DA
83 I DC 84 I DT 92 I DG 205 J DC 206 J DA 207 J
DT 208 J DG 209 J DT 210 J DA 218 J DA 219 J DT
220 J DG 280 J DG 281 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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