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PDBsum entry 5b2i
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5b2i calculated with MOLE 2.0 PDB id
5b2i
Pores calculated on whole structure Pores calculated excluding ligands
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18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.92 4.39 26.2 -1.66 -0.66 20.7 90 3 1 2 1 0 0 0  DG -14 I DC 61 I DG 62 I DT 63 I DA -67 J DT -
66 J DA -56 J DT 19 J
2 1.92 1.92 27.1 -0.43 -0.81 3.2 117 0 0 1 0 0 0 0  DT -25 I DA -
24 I DG 49 I DT 50 I DA 51 I DT 52 I DA -56 J DG -
55 J DC -49 J DC -48 J
3 2.75 2.92 28.2 -0.66 -0.36 12.4 86 3 0 3 2 0 0 0  DC -22 I DT -21 I DG -20 I DA -19 I DA -
56 J DT 19 J DC 20 J DA 25 J
4 3.37 3.56 34.7 -1.97 -0.68 21.6 88 5 1 4 1 0 0 0  DC -63 I DA -55 I DT 19 I DA 59 J DC 60 J
5 3.69 3.84 36.2 -1.81 -0.66 21.4 89 3 1 3 1 0 0 0  DT -65 I DA -55 I DT 19 I DA -25 J DG -15 J DC -
14 J DC 60 J DG 61 J DT 62 J
6 1.87 1.87 36.4 -0.73 -0.65 9.9 88 2 0 0 1 0 0 0  DG -15 I DG -14 I DC -13 I DA -12 I DT -11 I DG -
10 I DC 61 I DG 62 I DT 63 I DA -67 J DT -
66 J DC 15 J DT 16 J DT 17 J DT 18 J DT 19 J
7 1.74 2.02 52.9 -1.39 -0.70 15.6 85 5 0 1 0 0 0 0  DA -32 I DA -31 I DG 49 I DA 51 I DT 52 I DC -
49 J DC -48 J DA -47 J DA -46 J DA -
45 J DA 28 J DG 29 J DT 30 J DA 36 J
8 1.75 2.01 54.5 -1.77 -0.63 17.8 93 6 0 6 1 0 0 0  DA -32 I DA -31 I DA -24 I DA -
56 J DA 28 J DG 29 J DA 36 J
9 2.25 2.25 56.4 -1.39 -0.52 15.2 79 4 0 0 1 1 0 0  DG -
34 I DA 37 I DA 38 I DT 39 I DC 41 I DA 42 I DC
43 I DG 49 I DA 51 I DT 52 I DC -49 J DC -
48 J DA -47 J DA -46 J DA -45 J DG -43 J DT -
42 J DT -40 J DT 30 J DT 31 J
10 3.03 3.13 56.6 -2.01 -0.46 23.0 78 7 0 0 1 1 0 0  DG -34 I DG -33 I DA -32 I DA -
31 I DA 37 I DA 38 I DT 39 I DC 41 I DA 42 I DC
43 I DA -46 J DA -45 J DG -43 J DT -42 J DT -
40 J DA 28 J DG 29 J DT 30 J DT 31 J DA 36 J
11 3.03 3.13 68.2 -1.92 -0.38 22.1 83 8 1 4 3 2 0 0  DG -34 I DA -
24 I DA 37 I DA 38 I DT 39 I DC 41 I DC 43 I DA -
56 J DA -45 J DG -43 J DT -42 J DT -40 J
12 3.09 3.21 72.6 -1.84 -0.41 21.5 83 7 1 5 3 2 0 0  DA -44 I DG -42 I DT -41 I DG -35 J DA -
25 J DA 36 J DA 37 J DT 38 J DC 40 J DA 41 J DC
42 J
13 2.00 2.30 73.2 -1.58 -0.59 16.7 92 6 0 5 1 0 0 0  DA 29 I DG 30 I DC 34 I DC 35 I DA 36 I DA 37 I D
A -33 J DA -32 J DA -31 J DA -25 J
14 2.33 2.49 79.2 -1.46 -0.55 18.6 75 5 0 0 2 0 1 0  DT -65 I DC -64 I DA 0 I DG -15 J DT -
4 J DT 62 J DT 68 J DT 69 J DG 70 J
15 1.81 3.16 83.1 -1.49 -0.34 14.4 84 8 3 12 3 6 0 0  DA -24 I DA -56 J DA -25 J
16 2.48 2.64 95.5 -1.61 -0.53 18.9 83 8 3 5 3 2 0 0  DA -44 I DT -35 I DG -
34 I DA 37 I DA 38 I DT 39 I DA 40 I DC 41 I DT -
42 J DT -40 J DT -36 J DG -35 J DA -
25 J DA 39 J DC 40 J
17 2.27 2.27 105.8 -1.29 -0.66 15.3 83 5 3 5 2 1 0 0  DA -44 I DT -35 I DG -
34 I DA 40 I DC 41 I DA 42 I DG 49 I DA 51 I DT
52 I DC -49 J DC -48 J DA -47 J DA -46 J DA -
45 J DT -36 J DG -35 J DA -
25 J DT 30 J DT 31 J DA 39 J DC 40 J
18 1.69 1.97 137.0 -1.14 -0.34 20.7 79 9 0 1 4 0 1 0  DG -14 I DG -4 I DG -2 I DA -
1 I DA 0 I DT 1 I DC 61 I DG 62 I DT 63 I DA 68 I
DT 69 I DT 70 I DG 71 I DT 73 I DA -67 J DT -
66 J DC -65 J DC -64 J DA -2 J DA -
1 J DT 0 J MN 101 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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