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PDBsum entry 5b0z
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5b0z calculated with MOLE 2.0 PDB id
5b0z
Pores calculated on whole structure Pores calculated excluding ligands
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18 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.15 2.37 27.9 -1.11 -0.73 11.5 95 1 0 0 0 0 0 0  DG 46 I DC 47 I DT 48 I DC 49 I DC 50 I DA 51 I
DT 52 I DA 124 I DG 243 J DG 244 J DA 245 J DG
246 J DC 247 J DA 248 J DG 249 J DT 250 J
2 2.66 2.89 31.4 -1.10 -0.53 12.0 87 3 0 3 1 0 0 0  DC 50 I DA 51 I DT 52 I DA 165 J DT 239 J DG 240
J DG 243 J DG 244 J DA 245 J DG 246 J
3 3.85 3.85 31.6 -1.62 -0.75 16.1 87 4 1 3 0 0 0 0  DA 1 I DC 9 I DC 10 I DG 18 I DT 92 I DT 93 I DA
279 J DG 280 J DT 288 J DT 289 J
4 2.58 2.58 32.1 -1.36 -0.40 18.8 85 2 1 3 1 0 0 0  DC 89 I DT 90 I DT 91 I DT 92 I DT 93 I DC 195 J
DC 196 J DA 197 J DT 198 J DC 199 J DT 208 J DG
209 J
5 2.61 2.61 32.4 -0.45 -0.82 3.2 117 0 0 3 0 0 0 0  DT 48 I DG 122 I DT 123 I DA 124 I DA 165 J DC
171 J DC 172 J DA 173 J DG 249 J DT 250 J DT 251 J
6 3.32 3.32 33.3 -1.56 -0.67 19.3 81 4 1 0 0 0 0 0  DT 36 I DT 37 I DA 109 I DA 110 I DA 111 I DT 112
I DA 113 I DC 114 I DT 178 J DT 180 J DT 184 J DC
260 J DA 261 J
7 4.10 4.25 35.3 -1.51 -0.77 18.0 89 3 1 2 0 0 0 0  DG 58 I DG 59 I DA 133 I DG 134 I DT 136 I DT 154
J DC 155 J DA 165 J DT 239 J
8 2.28 2.64 36.7 -0.75 -0.54 9.7 91 3 0 5 1 1 1 0  DG 18 I DT 20 I DT 21 I DC 22 I DT 23 I DT 93 I
DC 195 J DG 267 J DA 270 J DG 271 J
9 3.37 3.37 38.9 -2.41 -0.34 28.8 79 4 1 0 1 1 0 0  DA 28 I DA 29 I DA 30 I DT 32 I DT 36 I DA 113 I
DC 114 I DT 183 J DT 184 J DT 258 J DC 260 J DA
261 J DC 262 J
10 3.22 3.24 39.9 -1.75 -0.45 20.7 82 5 1 1 1 1 0 0  DT 37 I DT 38 I DA 110 I DA 111 I DT 112 I DA 113
I DC 114 I DA 175 J DT 178 J DT 180 J DT 251 J DT
252 J
11 2.29 2.29 52.8 -2.60 -0.68 29.4 82 6 2 2 0 0 0 0  DA 1 I DA 7 I DT 8 I DC 9 I DC 10 I DA 83 I DC 84
I DG 205 J DC 206 J DA 207 J DT 208 J DG 209 J DA
279 J DG 280 J DG 281 J DT 282 J DT 288 J DT 289 J
12 2.91 3.06 60.6 -1.45 -0.71 15.5 91 4 1 5 1 0 0 0  DG 18 I DA 28 I DT 36 I DT 93 I DA 102 I DG 103 I
DT 104 I DT 105 I DA 113 I DC 114 I DT 183 J DT
184 J DG 185 J DC 195 J DA 261 J
13 3.00 3.00 68.2 -1.42 -0.69 16.3 75 3 0 0 0 0 0 0  DT 38 I DG 39 I DG 40 I DA 41 I DA 42 I DA 175 J
DG 249 J DT 250 J DT 251 J DT 252 J DC 254 J DA
255 J DA 256 J
14 2.54 2.54 87.2 -1.54 -0.50 18.3 85 7 0 5 3 2 1 0  DT 20 I DT 21 I DC 22 I DT 23 I DA 28 I DA 29 I D
A 30 I DT 32 I DA 102 I DG 103 I DT 104 I DT 105
I DG 185 J DT 258 J DC 260 J DA 261 J DC 262 J DA
270 J DG 271 J
15 2.40 2.40 97.5 -0.87 -0.79 8.9 93 4 1 4 0 0 0 0  DT 36 I DT 37 I DT 38 I DT 48 I DA 57 I DA 113 I
DC 114 I DT 123 I DA 124 I DA 133 I DG 134 I DG
164 J DA 165 J DA 174 J DA 175 J DT 184 J DT 239
J DG 240 J DG 249 J DT 250 J DT 251 J DC 260 J DA
261 J
16 3.32 3.32 102.1 -1.57 -0.72 18.7 81 6 1 1 0 0 0 0  DT 36 I DT 37 I DT 38 I DG 39 I DG 40 I DA 41 I D
A 42 I DA 113 I DC 114 I DT 184 J DG 249 J DT 250
J DT 251 J DC 254 J DA 255 J DA 256 J DC 260 J DA
261 J
17 1.56 1.64 131.6 -1.47 -0.45 19.6 80 11 0 2 4 0 2 0  DG 58 I DG 59 I DC 69 I DT 70 I DG 71 I DA 72 I D
A 73 I DT 74 I DA 133 I DG 134 I DT 136 I DA 141
I DT 142 I DT 143 I DT 154 J DC 155 J DC 156 J DA
157 J DT 216 J DT 220 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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