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PDBsum entry 5b0o

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protein ligands Protein-protein interface(s) links
Hydrolase/motor protein PDB id
5b0o

 

 

 

 

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Contents
Protein chains
445 a.a.
(+ 0 more) 135 a.a.
126 a.a.
127 a.a.
Ligands
ADP ×4
PDB id:
5b0o
Name: Hydrolase/motor protein
Title: Structure of the flih-flii complex
Structure: Flagellum-specific atp synthase. Chain: a, b, c, d. Engineered: yes. Flagellar assembly protein flih. Chain: e, f, g, h, i, j, k, l. Fragment: unp residues 99-235. Engineered: yes
Source: Salmonella typhimurium (strain lt2 / sgsc1412 / atcc 700720). Organism_taxid: 99287. Strain: lt2 / sgsc1412 / atcc 700720. Gene: flii, fla aiii, flac, stm1972. Expressed in: escherichia coli. Expression_system_taxid: 562. Salmonella typhimurium. Gene: flih, fla aii.3, fla biii, stm1971.
Resolution:
3.00Å     R-factor:   0.220     R-free:   0.270
Authors: K.Imada,Y.Uchida,M.Kinoshita,K.Namba,T.Minamino
Key ref: K.Imada et al. (2016). Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator. Proc Natl Acad Sci U S A, 113, 3633-3638. PubMed id: 26984495 DOI: 10.1073/pnas.1524025113
Date:
02-Nov-15     Release date:   23-Mar-16    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P26465  (FLII_SALTY) -  Flagellum-specific ATP synthase from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Seq:
Struc:
456 a.a.
445 a.a.
Protein chains
Pfam   ArchSchema ?
P15934  (FLIH_SALTY) -  Flagellar assembly protein FliH from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Seq:
Struc:
235 a.a.
135 a.a.
Protein chain
Pfam   ArchSchema ?
P15934  (FLIH_SALTY) -  Flagellar assembly protein FliH from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Seq:
Struc:
235 a.a.
126 a.a.
Protein chain
Pfam   ArchSchema ?
P15934  (FLIH_SALTY) -  Flagellar assembly protein FliH from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Seq:
Struc:
235 a.a.
127 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class 2: Chains A, B, C, D: E.C.7.1.2.2  - H(+)-transporting two-sector ATPase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: ATP + H2O + 4 H+(in) = ADP + phosphate + 5 H+(out)
ATP
+ H2O
+ 4 × H(+)(in)
=
ADP
Bound ligand (Het Group name = ADP)
corresponds exactly
+ phosphate
+ 5 × H(+)(out)
   Enzyme class 3: Chains E, F, G, H, I, J, K, L: E.C.?
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1073/pnas.1524025113 Proc Natl Acad Sci U S A 113:3633-3638 (2016)
PubMed id: 26984495  
 
 
Insight into the flagella type III export revealed by the complex structure of the type III ATPase and its regulator.
K.Imada, T.Minamino, Y.Uchida, M.Kinoshita, K.Namba.
 
  ABSTRACT  
 
FliI and FliJ form the FliI6FliJ ATPase complex of the bacterial flagellar export apparatus, a member of the type III secretion system. The FliI6FliJ complex is structurally similar to the α3β3γ complex of F1-ATPase. The FliH homodimer binds to FliI to connect the ATPase complex to the flagellar base, but the details are unknown. Here we report the structure of the homodimer of a C-terminal fragment of FliH (FliHC2) in complex with FliI. FliHC2shows an unusually asymmetric homodimeric structure that markedly resembles the peripheral stalk of the A/V-type ATPases. The FliHC2-FliI hexamer model reveals that the C-terminal domains of the FliI ATPase face the cell membrane in a way similar to the F/A/V-type ATPases. We discuss the mechanism of flagellar ATPase complex formation and a common origin shared by the type III secretion system and the F/A/V-type ATPases.
 

 

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