PDBsum entry 5ayq Go to PDB code:  Tunnel analysis for: 5ayq calculated with MOLE 2.0 PDB id 5ayq Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.46 15.3 -0.56 -0.25 10.4 74 0 2 3 2 3 0 0   2 1.15 1.64 21.5 -0.59 -0.40 8.7 84 1 1 4 2 2 0 0   3 1.15 1.64 31.7 -1.14 -0.70 13.9 91 1 2 7 2 2 0 0   4 1.31 2.40 18.5 -0.11 0.43 17.7 76 2 2 1 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.