PDBsum entry 5awf Go to PDB code:  Tunnel analysis for: 5awf calculated with MOLE 2.0 PDB id 5awf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.36 22.3 -1.24 -0.75 6.0 98 1 1 3 2 0 0 0   2 1.39 1.44 18.4 1.33 0.86 0.9 78 0 0 1 5 2 0 0   3 1.25 1.25 20.2 1.69 0.71 5.8 71 1 0 0 6 2 0 0   4 1.30 1.32 20.4 1.54 0.64 2.8 69 1 0 0 6 3 0 0   5 1.27 2.11 20.4 0.89 0.29 7.3 78 0 2 4 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.