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PDBsum entry 5avb
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Pore analysis for: 5avb calculated with  MOLE 2.0
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PDB id
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5avb
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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19 pores,
coloured by radius |
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23 pores,
coloured by radius
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23 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.65 |
2.65 |
28.6 |
0.16 |
-0.41 |
2.1 |
93 |
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0 |
0 |
3 |
1 |
0 |
0 |
0 |
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DC -25 I DC -24 I DT -22 I DC -21 I DG -
56 J DT 17 J DT 18 J DT 19 J DT 20 J
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2 |
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3.80 |
4.04 |
31.5 |
-1.63 |
-0.67 |
19.7 |
92 |
3 |
1 |
4 |
1 |
0 |
0 |
0 |
DC -25 I DC -14 I DG 61 I DG 62 I DG -56 J DT 19 J
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3 |
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3.86 |
3.86 |
34.6 |
-1.27 |
-0.67 |
15.5 |
93 |
2 |
1 |
4 |
1 |
0 |
0 |
0 |
DC -25 I DG -16 I DG -15 I DC -
14 I DG 61 I DG 62 I DG -56 J DT 19 J DT 20 J
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4 |
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2.73 |
2.92 |
35.3 |
-1.67 |
-0.63 |
18.8 |
81 |
3 |
1 |
3 |
2 |
0 |
0 |
0 |
DT -22 I DC -21 I DC -14 I DG 61 I DG 62 I DG -
56 J DT 17 J DT 18 J DT 19 J DT 20 J
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5 |
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3.24 |
3.24 |
37.2 |
-2.19 |
-0.48 |
25.8 |
80 |
3 |
2 |
0 |
1 |
1 |
0 |
0 |
DA 37 I DA 38 I DT 39 I DA 40 I DC 41 I DT -
42 J DT -40 J DG -35 J DA 40 J DC 41 J
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6 |
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2.82 |
2.82 |
37.3 |
-2.31 |
-0.61 |
27.1 |
75 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
DC -
14 I DG 61 I DT 63 I DT 69 I DT 70 I MN 103 I DA -
67 J DT -66 J DC -65 J DC -64 J
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7 |
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2.70 |
2.90 |
38.5 |
-1.37 |
-0.63 |
14.5 |
81 |
2 |
1 |
3 |
2 |
0 |
0 |
0 |
DT -22 I DC -21 I DG -16 I DG -15 I DC -
14 I DG 61 I DG 62 I DG -
56 J DT 17 J DT 18 J DT 19 J DT 20 J
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8 |
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3.31 |
3.31 |
46.2 |
-1.50 |
-0.88 |
19.2 |
79 |
1 |
2 |
0 |
0 |
0 |
0 |
0 |
DG -35 I DA 40 I DC 41 I MN 107 I DA -47 J DA -
46 J DA -45 J DG -
35 J DT 31 J DT 32 J DT 33 J DA 40 J DC 41 J
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9 |
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3.05 |
3.32 |
46.4 |
-2.12 |
-0.59 |
26.0 |
88 |
6 |
2 |
4 |
2 |
0 |
0 |
0 |
DG -56 I DA -45 I DG -35 J DC -25 J DA 40 J
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10 |
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2.81 |
2.81 |
46.6 |
-1.20 |
-0.72 |
13.5 |
75 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
DG -16 I DG -15 I DC -
14 I DG 61 I DG 62 I DT 69 I DT 70 I MN 103 I DC -
65 J DC -64 J DT 19 J DT 20 J
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11 |
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1.60 |
1.61 |
47.8 |
-1.45 |
-0.58 |
15.6 |
79 |
5 |
0 |
0 |
1 |
0 |
1 |
0 |
DG -6 I DC -5 I DT -4 I DC 6 I DA 72 I DA -
70 J DA -69 J DT -68 J DG -2 J DA -
1 J DT 0 J DT 1 J DT 7 J DG 8 J DC 11 J
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12 |
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2.48 |
2.48 |
48.1 |
-1.47 |
-0.46 |
22.4 |
81 |
5 |
0 |
0 |
2 |
0 |
0 |
0 |
DG -2 I DA -1 I DA 0 I DT 1 I DT -4 J DG -3 J DG -
2 J DA -1 J DT 0 J MN 103 J
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13 |
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3.63 |
3.63 |
50.9 |
-1.97 |
-0.65 |
22.3 |
91 |
5 |
1 |
5 |
1 |
0 |
0 |
0 |
DC -25 I DC 59 I DA 60 I DG 61 I MN 103 I DC -
64 J DC -62 J DC -61 J DG -56 J
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14 |
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2.80 |
2.80 |
54.4 |
-1.74 |
-0.65 |
19.5 |
88 |
4 |
1 |
3 |
1 |
0 |
0 |
0 |
DA 60 I DG 61 I DT 69 I DT 70 I MN 103 I DC -
65 J DC -64 J DG -56 J
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15 |
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3.23 |
3.23 |
55.8 |
-1.56 |
-0.45 |
16.8 |
81 |
4 |
1 |
0 |
1 |
1 |
0 |
0 |
DG -
35 I DA 37 I DA 38 I DT 39 I DA 40 I DC 41 I MN
107 I DA -47 J DA -46 J DA -45 J DT -42 J DT -
40 J DT 31 J DT 32 J DT 33 J
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16 |
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3.18 |
3.18 |
58.6 |
-1.74 |
-0.62 |
22.7 |
85 |
6 |
3 |
4 |
2 |
1 |
0 |
0 |
DG -35 I DC -25 I DA 40 I DC 41 I DA -45 J DG -
35 J DA 40 J DC 41 J
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17 |
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1.14 |
1.14 |
61.2 |
-1.45 |
-0.63 |
19.6 |
86 |
5 |
1 |
0 |
3 |
0 |
0 |
0 |
DA -67 I DC -
58 I DT 1 I DG 8 I DA 9 I DA 10 I DC 11 I DT 19 I
DT 20 I DG -15 J DC -14 J DA -13 J DT -4 J DG -
3 J DG 61 J DG 62 J
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18 |
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1.71 |
1.96 |
62.8 |
-1.43 |
-0.52 |
17.6 |
75 |
7 |
0 |
0 |
1 |
0 |
1 |
0 |
DC -5 I DT -
4 I DC 6 I DC 59 I DT 69 I DT 70 I MN 103 I DT -
66 J DC -65 J DC -64 J DC -62 J DC -61 J DG -
2 J DA -1 J DT 0 J DT 1 J
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19 |
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3.20 |
3.20 |
68.2 |
-1.77 |
-0.46 |
21.7 |
84 |
9 |
2 |
4 |
3 |
2 |
0 |
0 |
DG -35 I DC -
25 I DA 37 I DA 38 I DT 39 I DA 40 I DC 41 I DA -
45 J DT -42 J DT -40 J
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20 |
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2.03 |
3.89 |
87.1 |
-2.28 |
-0.47 |
27.8 |
77 |
10 |
4 |
3 |
2 |
3 |
0 |
0 |
DG -35 I DC 6 I MN 107 I DA -47 J DA -46 J DA -
45 J DG -2 J DA -1 J DT 31 J DT 32 J DT 33 J
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21 |
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2.05 |
4.08 |
94.8 |
-2.58 |
-0.44 |
30.8 |
77 |
13 |
5 |
3 |
3 |
4 |
0 |
0 |
DG -
35 I DC 6 I DA 37 I DA 38 I DT 39 I DA 40 I DC 41
I DA -45 J DT -42 J DT -40 J DG -2 J DA -1 J
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22 |
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2.07 |
4.26 |
118.3 |
-1.84 |
-0.40 |
23.1 |
80 |
15 |
4 |
6 |
7 |
2 |
1 |
0 |
DA -45 I DG -35 J DG -2 J DA -1 J DA 40 J DC 41 J
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23 |
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2.04 |
4.38 |
137.4 |
-1.75 |
-0.42 |
21.6 |
83 |
16 |
3 |
10 |
9 |
2 |
1 |
0 |
DG -56 I DC -25 J DG -2 J DA -1 J
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program