PDBsum entry 5ara Go to PDB code:  Pore analysis for: 5ara calculated with MOLE 2.0 PDB id 5ara Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.63 2.63 35.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   2 3.79 3.79 41.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   3 2.33 2.33 47.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   4 2.07 2.07 47.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   5 2.87 2.87 52.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   6 3.68 3.68 72.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   7 2.26 2.26 78.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   8 2.38 2.38 83.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   9 2.41 2.41 86.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   10 2.70 2.70 88.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   11 1.57 1.57 87.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   12 2.29 2.29 90.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   13 2.40 2.40 95.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   14 2.97 2.97 102.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   15 2.22 2.22 102.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   16 1.76 1.76 105.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   17 2.44 2.44 104.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   18 3.55 3.55 106.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   19 2.61 2.61 119.7 -0.40 -0.80 3.4 107 0 0 0 0 0 0 0   20 1.89 1.89 123.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   21 1.57 1.57 125.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   22 2.23 2.23 135.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   23 2.30 2.30 136.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   24 1.68 1.68 142.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   25 2.18 2.18 144.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   26 1.70 1.70 152.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   27 3.03 3.03 158.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   28 2.65 2.65 156.7 -0.40 -0.80 3.4 107 0 0 0 0 0 0 0   29 2.87 2.87 164.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   30 2.58 2.58 216.0 -0.40 -0.80 3.4 107 0 0 0 0 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.