PDBsum entry 5amf Go to PDB code:  Tunnel analysis for: 5amf calculated with MOLE 2.0 PDB id 5amf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.73 18.8 -1.61 -0.07 28.0 81 5 3 1 3 1 0 0   2 1.20 1.73 20.3 -1.33 0.12 25.0 80 6 3 1 3 2 0 0   3 1.18 1.72 21.5 -2.07 -0.12 30.3 83 5 2 1 2 1 0 0   4 1.20 1.79 23.0 -1.57 0.12 25.4 81 6 2 1 2 2 0 0   5 1.16 1.76 26.0 -1.99 -0.34 33.5 80 6 6 1 4 1 0 0   6 1.36 1.36 15.7 0.76 0.17 4.2 75 0 1 2 2 3 0 1  TWL 1143 A 7 1.42 1.76 29.9 -0.31 -0.26 8.3 77 2 1 2 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.