PDBsum entry 5afu Go to PDB code:  Pore analysis for: 5afu calculated with MOLE 2.0 PDB id 5afu Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 34 pores, coloured by radius 34 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.38 31.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 140 M UNK 141 M UNK 143 M UNK 144 M UNK 145 M UNK 147 M UNK 148 M UNK 149 M UNK 151 M UNK 152 M UNK 154 M UNK 339 M UNK 342 M UNK 343 M UNK 349 M UNK 350 M UNK 353 M UNK 537 M UNK 540 M UNK 541 M UNK 544 M UNK 547 M UNK 548 M UNK 551 M 2 2.03 2.03 33.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 133 1 UNK 136 1 UNK 137 1 UNK 140 1 UNK 143 1 UNK 166 1 UNK 167 1 UNK 169 1 UNK 65 2 UNK 75 2 UNK 76 2 UNK 84 2 UNK 96 2 UNK 125 2 UNK 129 2 UNK 130 2 UNK 133 2 UNK 169 2 UNK 170 2 UNK 173 2 UNK 174 2 UNK 317 2 3 1.54 1.54 55.0 -0.89 -0.81 9.7 94 0 1 1 1 0 0 0  UNK 140 M UNK 141 M UNK 142 M UNK 143 M UNK 144 M UNK 145 M UNK 147 M UNK 339 M UNK 342 M UNK 343 M UNK 532 M UNK 536 M UNK 537 M UNK 540 M UNK 606 M UNK 610 M UNK 613 M UNK 617 M UNK 620 M UNK 805 M UNK 809 M UNK 812 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 4 2.45 2.44 57.4 -1.79 -0.62 22.7 87 4 3 2 1 0 0 0  UNK 302 1 UNK 306 1 UNK 340 1 UNK 344 1 UNK 347 1 UNK 349 1 UNK 350 1 UNK 404 1 UNK 408 1 UNK 410 1 UNK 80 5 5 1.41 1.41 60.9 -0.57 -0.78 5.0 94 0 1 1 1 0 0 0  UNK 145 M UNK 148 M UNK 149 M UNK 151 M UNK 152 M UNK 154 M UNK 349 M UNK 350 M UNK 353 M UNK 532 M UNK 536 M UNK 540 M UNK 543 M UNK 544 M UNK 547 M UNK 548 M UNK 551 M UNK 603 M UNK 606 M UNK 610 M UNK 613 M UNK 617 M UNK 620 M UNK 802 M UNK 805 M UNK 809 M UNK 812 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 6 2.20 2.20 64.2 -1.68 -0.81 16.7 86 2 1 2 0 0 0 0  UNK 168 1 UNK 188 1 UNK 189 1 UNK 191 1 UNK 192 1 UNK 212 1 UNK 215 1 UNK 218 1 UNK 219 1 UNK 222 1 UNK 223 1 UNK 224 1 UNK 226 1 UNK 227 1 UNK 228 1 UNK 232 1 UNK 234 1 UNK 235 1 UNK 237 1 UNK 278 1 UNK 281 1 UNK 287 1 UNK 290 1 UNK 292 1 UNK 293 1 UNK 299 1 UNK 306 1 UNK 351 1 7 2.03 2.03 67.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 15 1 UNK 19 1 UNK 20 1 UNK 23 1 UNK 39 1 UNK 43 1 UNK 47 1 UNK 62 1 UNK 64 1 UNK 73 1 UNK 74 1 UNK 83 1 UNK 99 1 UNK 100 1 UNK 114 1 UNK 140 1 UNK 143 1 UNK 32 2 UNK 65 2 UNK 75 2 UNK 76 2 UNK 84 2 UNK 94 2 UNK 96 2 UNK 119 2 UNK 125 2 UNK 129 2 8 2.20 2.20 75.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 15 1 UNK 19 1 UNK 20 1 UNK 23 1 UNK 39 1 UNK 43 1 UNK 47 1 UNK 62 1 UNK 64 1 UNK 73 1 UNK 74 1 UNK 99 1 UNK 100 1 UNK 114 1 UNK 133 1 UNK 136 1 UNK 137 1 UNK 166 1 UNK 167 1 UNK 169 1 UNK 32 2 UNK 94 2 UNK 118 2 UNK 119 2 UNK 125 2 UNK 128 2 UNK 129 2 UNK 130 2 UNK 132 2 UNK 133 2 UNK 169 2 UNK 170 2 UNK 173 2 UNK 174 2 UNK 317 2 9 2.24 2.24 100.1 -1.50 -0.71 17.9 84 4 4 2 1 0 0 0  UNK 188 1 UNK 189 1 UNK 191 1 UNK 192 1 UNK 212 1 UNK 215 1 UNK 218 1 UNK 219 1 UNK 222 1 UNK 223 1 UNK 226 1 UNK 230 1 UNK 265 1 UNK 266 1 UNK 269 1 UNK 275 1 UNK 278 1 UNK 281 1 UNK 293 1 UNK 297 1 UNK 300 1 UNK 301 1 UNK 304 1 UNK 305 1 UNK 340 1 UNK 344 1 UNK 347 1 UNK 349 1 UNK 350 1 UNK 404 1 UNK 408 1 UNK 410 1 UNK 80 5 10 1.88 1.88 99.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 116 1 UNK 118 1 UNK 127 1 UNK 128 1 UNK 129 1 UNK 131 1 UNK 132 1 UNK 133 1 UNK 136 1 UNK 140 1 UNK 143 1 UNK 175 1 UNK 178 1 UNK 180 1 UNK 182 1 UNK 232 1 UNK 233 1 UNK 234 1 UNK 236 1 UNK 237 1 UNK 258 1 UNK 261 1 UNK 262 1 UNK 265 1 UNK 303 1 UNK 306 1 UNK 310 1 UNK 351 1 UNK 353 1 UNK 65 2 UNK 75 2 UNK 76 2 UNK 84 2 UNK 96 2 UNK 114 2 UNK 116 2 UNK 118 2 UNK 125 2 UNK 129 2 UNK 132 2 UNK 133 2 UNK 136 2 11 1.16 2.43 103.5 -1.73 -0.27 26.5 77 17 8 3 5 6 0 0  UNK 20 6 UNK 24 6 UNK 27 6 ADP 800 A 12 1.83 1.83 128.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  UNK 16 1 UNK 19 1 UNK 20 1 UNK 63 1 UNK 64 1 UNK 73 1 UNK 74 1 UNK 75 1 UNK 76 1 UNK 77 1 UNK 78 1 UNK 82 1 UNK 84 1 UNK 88 1 UNK 96 1 UNK 125 1 UNK 127 1 UNK 128 1 UNK 131 1 UNK 175 1 UNK 178 1 UNK 180 1 UNK 182 1 UNK 232 1 UNK 233 1 UNK 234 1 UNK 236 1 UNK 237 1 UNK 258 1 UNK 261 1 UNK 262 1 UNK 265 1 UNK 303 1 UNK 306 1 UNK 310 1 UNK 351 1 UNK 353 1 UNK 143 2 UNK 146 2 UNK 147 2 13 2.55 3.49 130.4 -2.35 -0.62 29.9 79 10 9 2 3 1 1 0  UNK 158 1 UNK 159 1 UNK 162 1 UNK 166 1 UNK 237 1 UNK 302 1 UNK 306 1 UNK 349 1 UNK 351 1 UNK 169 2 UNK 173 2 UNK 176 2 UNK 308 2 UNK 311 2 UNK 312 2 UNK 313 2 UNK 315 2 UNK 316 2 UNK 317 2 UNK 345 2 UNK 347 2 UNK 123 5 UNK 126 5 UNK 121 6 UNK 124 6 UNK 125 6 UNK 128 6 UNK 129 6 14 1.98 1.98 160.1 -1.44 -0.74 16.9 84 4 4 2 1 0 0 0  UNK 116 1 UNK 118 1 UNK 127 1 UNK 128 1 UNK 129 1 UNK 131 1 UNK 132 1 UNK 133 1 UNK 136 1 UNK 140 1 UNK 143 1 UNK 175 1 UNK 178 1 UNK 180 1 UNK 182 1 UNK 184 1 UNK 229 1 UNK 230 1 UNK 232 1 UNK 233 1 UNK 236 1 UNK 265 1 UNK 266 1 UNK 268 1 UNK 269 1 UNK 297 1 UNK 300 1 UNK 301 1 UNK 304 1 UNK 305 1 UNK 340 1 UNK 344 1 UNK 347 1 UNK 349 1 UNK 350 1 UNK 404 1 UNK 408 1 UNK 410 1 UNK 65 2 UNK 75 2 UNK 76 2 UNK 84 2 UNK 96 2 UNK 114 2 UNK 116 2 UNK 118 2 UNK 125 2 UNK 129 2 UNK 132 2 UNK 133 2 UNK 136 2 UNK 80 5 15 2.55 2.69 157.9 -1.78 -0.53 22.3 76 7 8 3 3 3 2 0  UNK 158 1 UNK 159 1 UNK 162 1 UNK 166 1 UNK 169 1 UNK 189 1 UNK 191 1 UNK 192 1 UNK 210 1 UNK 211 1 UNK 212 1 UNK 213 1 UNK 215 1 UNK 218 1 UNK 219 1 UNK 280 1 UNK 281 1 UNK 283 1 UNK 284 1 UNK 285 1 UNK 169 2 UNK 173 2 UNK 176 2 UNK 201 2 UNK 202 2 UNK 204 2 UNK 269 2 UNK 275 2 UNK 301 2 UNK 304 2 UNK 308 2 UNK 311 2 UNK 312 2 UNK 313 2 UNK 315 2 UNK 316 2 UNK 317 2 16 1.22 2.37 172.7 -0.93 -0.17 20.3 81 18 10 6 15 5 2 0  UNK 237 1 UNK 302 1 UNK 306 1 UNK 349 1 UNK 351 1 17 1.82 2.00 177.3 -1.99 -0.47 28.7 79 18 14 4 7 2 0 0  UNK 302 1 UNK 306 1 UNK 349 1 UNK 323 M UNK 327 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 613 M UNK 617 M UNK 620 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 18 1.90 2.35 185.5 -1.93 -0.46 27.1 79 17 13 3 6 2 0 0  UNK 302 1 UNK 306 1 UNK 349 1 UNK 145 M UNK 148 M UNK 149 M UNK 150 M UNK 151 M UNK 152 M UNK 154 M UNK 323 M UNK 327 M UNK 349 M UNK 350 M UNK 353 M UNK 528 M UNK 531 M UNK 532 M UNK 535 M UNK 536 M UNK 539 M UNK 540 M UNK 543 M UNK 544 M UNK 547 M UNK 548 M UNK 551 M UNK 603 M UNK 606 M UNK 802 M UNK 805 M UNK 808 M UNK 812 M 19 1.91 1.91 189.1 -1.27 -0.74 14.8 87 4 4 3 1 0 0 0  UNK 16 1 UNK 19 1 UNK 20 1 UNK 63 1 UNK 64 1 UNK 73 1 UNK 74 1 UNK 75 1 UNK 76 1 UNK 77 1 UNK 78 1 UNK 82 1 UNK 84 1 UNK 88 1 UNK 96 1 UNK 125 1 UNK 127 1 UNK 128 1 UNK 131 1 UNK 175 1 UNK 178 1 UNK 180 1 UNK 182 1 UNK 184 1 UNK 229 1 UNK 230 1 UNK 232 1 UNK 233 1 UNK 236 1 UNK 265 1 UNK 266 1 UNK 268 1 UNK 269 1 UNK 297 1 UNK 300 1 UNK 301 1 UNK 304 1 UNK 305 1 UNK 340 1 UNK 344 1 UNK 347 1 UNK 349 1 UNK 350 1 UNK 404 1 UNK 408 1 UNK 410 1 UNK 143 2 UNK 146 2 UNK 147 2 UNK 80 5 20 2.19 2.19 204.5 -0.54 -0.75 6.3 91 1 1 1 2 0 0 0  UNK 58 M UNK 62 M UNK 65 M UNK 69 M UNK 72 M UNK 201 M UNK 202 M UNK 205 M UNK 208 M UNK 279 M UNK 282 M UNK 285 M UNK 289 M UNK 401 M UNK 404 M UNK 429 M UNK 433 M UNK 501 M UNK 508 M UNK 511 M UNK 512 M UNK 515 M UNK 518 M UNK 519 M UNK 522 M UNK 525 M UNK 529 M UNK 532 M UNK 613 M UNK 617 M UNK 620 M UNK 816 M UNK 819 M UNK 822 M UNK 61 N UNK 64 N UNK 65 N UNK 286 N UNK 451 N UNK 454 N UNK 457 N UNK 91 O UNK 83 P UNK 86 P UNK 87 P UNK 90 P UNK 1007 Z UNK 1010 Z UNK 1025 Z UNK 1028 Z UNK 1029 Z UNK 1032 Z UNK 1035 Z UNK 1010 z UNK 1013 z UNK 1014 z UNK 1018 z UNK 1022 z UNK 1023 z UNK 1026 z UNK 1027 z UNK 1030 z UNK 1031 z UNK 1034 z UNK 1037 z UNK 1038 z UNK 1041 z UNK 1047 z UNK 1048 z UNK 1049 z UNK 1051 z UNK 1052 z UNK 1053 z 21 1.23 2.52 223.8 -2.33 -0.43 34.1 81 34 26 10 7 7 0 0  UNK 302 1 UNK 306 1 UNK 349 1 ADP 800 A 22 1.28 1.78 222.1 -2.09 -0.45 30.7 82 30 18 10 8 7 0 0  ADP 800 A UNK 323 M UNK 327 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 613 M UNK 617 M UNK 620 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 23 1.27 2.56 231.1 -0.93 -0.11 21.0 79 23 9 6 19 7 3 0  UNK 140 M UNK 141 M UNK 142 M UNK 143 M UNK 144 M UNK 145 M UNK 147 M UNK 323 M UNK 327 M UNK 339 M UNK 342 M UNK 343 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 533 M UNK 536 M UNK 537 M UNK 540 M UNK 610 M UNK 614 M UNK 617 M UNK 96 P 24 1.29 1.66 244.5 -1.44 -0.39 20.8 84 24 11 14 17 4 3 0  ADP 800 G UNK 323 M UNK 327 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 613 M UNK 617 M UNK 620 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 25 1.48 1.48 246.9 -1.95 -0.55 27.5 78 19 18 4 7 3 1 0  UNK 158 1 UNK 159 1 UNK 162 1 UNK 166 1 UNK 169 2 UNK 173 2 UNK 176 2 UNK 308 2 UNK 311 2 UNK 312 2 UNK 313 2 UNK 315 2 UNK 316 2 UNK 317 2 UNK 345 2 UNK 347 2 UNK 123 5 UNK 126 5 UNK 121 6 UNK 124 6 UNK 125 6 UNK 128 6 UNK 129 6 UNK 140 M UNK 141 M UNK 142 M UNK 143 M UNK 144 M UNK 145 M UNK 147 M UNK 323 M UNK 327 M UNK 339 M UNK 342 M UNK 343 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 533 M UNK 536 M UNK 537 M UNK 540 M UNK 610 M UNK 614 M UNK 617 M UNK 96 P 26 1.52 2.31 253.5 -2.16 -0.52 27.5 82 31 16 12 7 4 1 0  UNK 20 6 UNK 24 6 UNK 27 6 UNK 323 M UNK 327 M UNK 528 M UNK 529 M UNK 531 M UNK 532 M UNK 613 M UNK 617 M UNK 620 M UNK 816 M UNK 819 M UNK 822 M UNK 1051 z UNK 1052 z UNK 1053 z 27 1.54 2.64 255.3 -2.38 -0.50 31.4 81 35 24 12 6 4 1 0  UNK 302 1 UNK 306 1 UNK 349 1 UNK 20 6 UNK 24 6 UNK 27 6 28 2.08 2.15 311.3 -1.80 -0.56 24.6 79 15 14 4 5 2 0 0  UNK 302 1 UNK 306 1 UNK 349 1 UNK 58 M UNK 62 M UNK 65 M UNK 69 M UNK 72 M UNK 118 M UNK 119 M UNK 121 M UNK 122 M UNK 123 M UNK 201 M UNK 202 M UNK 205 M UNK 208 M UNK 279 M UNK 282 M UNK 285 M UNK 289 M UNK 319 M UNK 322 M UNK 323 M UNK 326 M UNK 401 M UNK 402 M UNK 404 M UNK 429 M UNK 433 M UNK 501 M UNK 508 M UNK 511 M UNK 512 M UNK 516 M UNK 61 N UNK 64 N UNK 65 N UNK 286 N UNK 451 N UNK 454 N UNK 457 N UNK 91 O UNK 83 P UNK 108 P UNK 109 P UNK 112 P UNK 1007 Z UNK 1010 Z UNK 1025 Z UNK 1028 Z UNK 1029 Z UNK 1032 Z UNK 1035 Z UNK 1010 z UNK 1013 z UNK 1014 z UNK 1018 z UNK 1022 z UNK 1023 z UNK 1026 z UNK 1027 z UNK 1030 z UNK 1031 z UNK 1034 z UNK 1037 z UNK 1038 z UNK 1041 z 29 1.92 1.98 374.4 -1.94 -0.39 27.1 79 39 30 15 13 8 4 3  UNK 158 1 UNK 159 1 UNK 162 1 UNK 166 1 UNK 169 1 UNK 169 2 UNK 173 2 UNK 176 2 UNK 298 2 UNK 301 2 UNK 304 2 UNK 308 2 UNK 311 2 UNK 312 2 UNK 313 2 UNK 315 2 UNK 316 2 UNK 317 2 30 1.95 1.95 495.6 -1.95 -0.43 26.8 80 47 39 16 19 8 8 2  UNK 237 1 UNK 302 1 UNK 306 1 UNK 349 1 UNK 351 1 UNK 298 2 UNK 301 2 UNK 304 2 UNK 308 2 UNK 345 2 UNK 347 2 UNK 123 5 UNK 126 5 UNK 215 5 UNK 216 5 UNK 218 5 UNK 219 5 UNK 223 5 UNK 226 5 UNK 121 6 UNK 124 6 UNK 125 6 UNK 128 6 UNK 129 6 UNK 221 6 UNK 228 6 UNK 229 6 UNK 232 6 UNK 192 Y UNK 193 Y UNK 313 Y UNK 315 Y UNK 330 Y UNK 331 Y UNK 334 Y UNK 336 Y UNK 347 Y UNK 349 Y 31 1.28 1.44 28.8 0.60 -0.18 6.3 94 1 2 4 4 0 0 1   32 1.37 1.49 41.5 0.28 -0.15 7.2 86 2 2 4 7 2 0 2   33 1.49 1.67 54.1 -0.08 -0.09 7.7 80 4 2 6 7 6 1 1   34 1.50 1.68 66.8 -0.62 -0.35 9.8 81 4 4 7 6 4 4 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.