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PDBsum entry 5afp
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Tunnel analysis for: 5afp calculated with  MOLE 2.0
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PDB id
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5afp
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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4 tunnels,
coloured by
tunnel radius
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4 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.88 |
19.1 |
2.50 |
1.20 |
4.6 |
64 |
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0 |
1 |
0 |
5 |
6 |
0 |
0 |
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2 |
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1.16 |
1.88 |
21.1 |
1.58 |
0.79 |
9.4 |
70 |
1 |
1 |
1 |
4 |
5 |
0 |
0 |
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3 |
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1.29 |
2.16 |
23.0 |
2.00 |
0.94 |
8.5 |
69 |
1 |
1 |
0 |
4 |
5 |
0 |
0 |
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4 |
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1.29 |
2.01 |
30.5 |
2.11 |
1.02 |
6.0 |
64 |
0 |
1 |
1 |
5 |
7 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program