PDBsum entry 5af1

Tunnel analysis for: 5af1 calculated with

MOLE 2.0

PDB id

5af1

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.39

1.48

38.3

-0.59

-0.31

11.5

81

3

3

1

6

2

1

0

2

1.39

1.48

40.1

-0.43

-0.28

9.1

84

2

2

1

6

2

1

0

3

1.39

1.48

42.6

-0.20

-0.25

9.5

81

3

3

1

8

2

1

0

4

1.15

2.30

17.4

2.24

0.57

3.2

82

0

1

0

9

0

0

0

5

1.17

2.37

31.0

0.84

0.08

8.5

85

2

1

0

10

0

0

0

6

1.38

1.39

32.5

-0.32

-0.22

8.4

83

1

2

1

6

2

1

0

7

1.29

1.29

32.5

-0.31

-0.24

7.5

81

0

2

1

5

2

1

0

8

1.21

1.21

37.0

-1.31

-0.29

24.2

86

5

3

1

6

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.