PDBsum entry 5aer Go to PDB code:  Tunnel analysis for: 5aer calculated with MOLE 2.0 PDB id 5aer Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.44 19.2 -1.97 -0.88 22.1 90 1 2 3 1 0 0 0   2 1.47 1.47 21.7 -2.00 -0.61 23.8 75 2 1 1 1 1 0 0   3 1.25 1.37 20.6 0.64 0.35 7.2 73 2 0 1 7 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.