PDBsum entry 5a9j Go to PDB code:  Pore analysis for: 5a9j calculated with MOLE 2.0 PDB id 5a9j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.45 3.50 54.1 -1.31 -0.12 18.8 83 6 3 6 6 4 1 0   2 1.84 2.06 66.8 -2.06 -0.40 28.9 86 13 9 7 5 2 0 0   3 1.49 3.48 77.0 -1.74 -0.36 21.6 85 12 6 10 5 3 1 0   4 2.33 2.35 78.5 -2.04 -0.48 23.1 84 11 6 8 2 3 1 0   5 1.21 1.38 80.6 -1.53 -0.25 23.4 75 9 5 5 6 2 0 1   6 1.56 1.55 82.5 -1.39 -0.51 20.5 91 5 8 6 5 1 1 0   7 1.25 1.23 98.6 -1.87 -0.44 23.2 88 11 6 9 2 2 1 0   8 1.20 1.32 106.9 -1.55 -0.31 23.9 83 13 9 6 7 4 0 1   9 1.30 1.30 117.8 -1.31 -0.24 22.4 80 10 9 6 6 8 1 1   10 1.86 2.16 120.4 -1.91 -0.50 24.7 86 14 10 11 8 3 0 0   11 1.32 1.34 135.5 -0.82 -0.14 13.7 77 6 5 8 8 7 3 1   12 1.31 1.30 140.3 -0.77 -0.09 16.3 80 7 6 9 8 9 2 1   13 1.22 2.04 143.5 -1.22 -0.32 20.2 83 12 11 11 10 6 1 1   14 1.26 1.68 151.6 -1.15 -0.33 15.8 88 14 9 15 9 4 1 0   15 2.21 3.06 152.6 -1.61 -0.50 17.6 86 14 11 17 6 5 1 0   16 1.29 1.27 156.5 -1.26 -0.31 21.2 83 15 11 9 12 4 1 1   17 1.90 2.09 157.8 -1.79 -0.48 25.1 89 17 13 10 6 3 0 1   18 1.27 1.31 164.6 -1.24 -0.28 18.5 82 15 10 13 9 5 2 1   19 1.77 3.23 168.7 -1.61 -0.43 24.0 86 13 14 10 5 7 1 1   20 1.18 1.33 171.0 -1.11 -0.24 19.7 85 15 13 13 20 4 0 1   21 1.19 1.42 169.6 -1.05 -0.27 17.5 87 13 12 16 18 2 1 0   22 1.20 1.20 194.4 -1.53 -0.47 22.2 87 15 15 14 9 5 1 1   23 1.29 1.59 237.1 -1.78 -0.35 25.5 85 27 19 15 13 8 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.