PDBsum entry 5a9f Go to PDB code:  Pore analysis for: 5a9f calculated with MOLE 2.0 PDB id 5a9f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.99 2.17 27.9 -0.87 -0.12 19.4 87 4 2 2 3 1 0 0   2 1.74 2.96 30.5 -1.31 -0.28 23.1 91 4 2 4 3 1 0 0   3 1.64 2.59 42.8 -1.37 -0.15 17.9 78 4 2 4 4 4 1 0   4 1.60 2.41 43.6 -1.32 -0.28 13.4 84 5 1 5 3 2 1 0   5 3.50 3.82 49.3 -1.09 -0.42 13.1 85 3 2 7 2 2 0 0   6 1.23 1.37 69.5 -0.32 -0.13 10.4 72 3 2 6 7 4 1 0   7 2.17 3.82 69.6 -1.04 -0.24 13.9 82 6 2 8 3 6 0 0   8 1.64 2.55 70.9 -1.40 -0.28 14.6 80 6 2 8 5 5 1 0   9 1.88 1.86 74.3 -1.52 -0.54 14.9 83 6 5 9 3 1 3 0   10 1.04 1.43 76.2 -0.12 -0.08 13.0 94 4 4 7 11 0 0 0   11 1.85 1.85 77.9 -1.37 -0.42 15.9 80 6 5 7 4 3 3 0   12 1.22 1.33 100.0 -0.67 -0.14 13.4 77 8 4 8 10 8 1 0   13 1.91 1.89 101.6 -1.31 -0.41 13.7 81 8 4 11 5 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.