PDBsum entry 5a46

Transferase

PDB id: 5a46

Contents

Protein chains

290 a.a.

Ligands

EDO ×4

38O ×2

SO4 ×3

Waters ×226

References listed in PDB file

Key reference

• Title: Structural and dynamic insights into the energetics of activation loop rearrangement in fgfr1 kinase.
• Authors: T.Klein, N.Vajpai, J.J.Phillips, G.Davies, G.A.Holdgate, C.Phillips, J.A.Tucker, R.A.Norman, A.D.Scott, D.R.Higazi, D.Lowe, G.S.Thompson, A.L.Breeze.
• Ref.: Nat Commun, 2015, 6, 7877. [DOI no: 10.1038/ncomms8877]
• PubMed id: 26203596

Abstract

Protein tyrosine kinases differ widely in their propensity to undergo rearrangements of the N-terminal Asp-Phe-Gly (DFG) motif of the activation loop, with some, including FGFR1 kinase, appearing refractory to this so-called 'DFG flip'. Recent inhibitor-bound structures have unexpectedly revealed FGFR1 for the first time in a 'DFG-out' state. Here we use conformationally selective inhibitors as chemical probes for interrogation of the structural and dynamic features that appear to govern the DFG flip in FGFR1. Our detailed structural and biophysical insights identify contributions from altered dynamics in distal elements, including the αH helix, towards the outstanding stability of the DFG-out complex with the inhibitor ponatinib. We conclude that the αC-β4 loop and 'molecular brake' regions together impose a high energy barrier for this conformational rearrangement, and that this may have significance for maintaining autoinhibition in the non-phosphorylated basal state of FGFR1.