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PDBsum entry 5a1x
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 5a1x calculated with MOLE 2.0 PDB id
5a1x
Pores calculated on whole structure Pores calculated excluding ligands
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77 pores, coloured by radius 77 pores, coloured by radius 77 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.26 2.26 30.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 2.30 2.30 39.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 2.31 2.31 54.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 1.78 1.78 62.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
5 2.30 2.30 65.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 1.93 1.93 68.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
7 2.26 2.26 78.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
8 1.08 1.08 107.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
9 1.71 1.71 118.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
10 1.24 1.24 124.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
11 1.77 1.77 125.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
12 1.55 1.55 130.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
13 1.61 1.61 141.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
14 2.54 2.54 144.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
15 1.92 1.92 152.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
16 1.24 1.24 187.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
17 1.51 1.51 201.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
18 1.73 1.73 197.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
19 1.24 1.24 203.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
20 1.90 1.90 202.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
21 1.99 1.99 212.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
22 1.74 1.74 257.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
23 1.51 1.51 351.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
24 1.53 1.53 37.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
25 2.30 2.30 39.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
26 1.63 1.63 47.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
27 2.20 2.20 62.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
28 1.85 1.85 64.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
29 2.23 2.23 73.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
30 2.24 2.24 88.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
31 1.17 1.17 93.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
32 2.15 2.15 93.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
33 1.42 1.42 95.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
34 2.25 2.25 97.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
35 1.97 1.97 105.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
36 1.26 1.26 111.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
37 1.32 1.32 113.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
38 1.89 1.89 145.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
39 1.24 1.24 152.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
40 1.28 1.28 161.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
41 1.24 1.24 168.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
42 1.24 1.24 174.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
43 1.24 1.24 182.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
44 1.76 1.76 184.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
45 1.81 1.81 213.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
46 1.24 1.24 224.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
47 1.29 1.29 245.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
48 1.29 1.29 263.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
49 1.51 1.51 271.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
50 1.67 1.67 269.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
51 1.29 1.29 302.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
52 2.13 2.13 30.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
53 2.20 2.20 33.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
54 1.40 1.40 35.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
55 1.24 1.24 40.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
56 1.62 1.62 54.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
57 1.99 1.99 57.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
58 1.64 1.64 60.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
59 2.04 2.04 62.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
60 1.88 1.88 63.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
61 1.64 1.64 66.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
62 1.54 1.54 70.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
63 1.57 1.57 77.9 -0.37 -0.79 3.4 54 0 0 0 1 0 0 0  
64 1.64 1.64 78.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
65 2.11 2.11 80.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
66 1.40 1.40 82.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
67 1.40 1.40 85.9 -0.37 -0.79 3.4 54 0 0 0 1 0 0 0  
68 1.93 1.93 86.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
69 0.74 0.74 90.5 -0.36 -0.78 3.4 54 0 0 0 1 0 0 0  
70 1.40 1.40 92.6 -0.37 -0.78 3.4 54 0 0 0 1 0 0 0  
71 1.59 1.59 94.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
72 0.74 0.74 124.3 -0.38 -0.79 3.4 54 0 0 0 1 0 0 0  
73 1.95 1.95 130.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
74 1.94 1.94 136.1 -0.38 -0.79 3.4 54 0 0 0 1 0 0 0  
75 1.64 1.64 149.9 -0.38 -0.79 3.4 54 0 0 0 1 0 0 0  
76 1.90 1.90 157.0 -0.38 -0.79 3.4 54 0 0 0 1 0 0 0  
77 1.46 1.46 39.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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