spacer
spacer

PDBsum entry 5a1v
Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 5a1v calculated with MOLE 2.0 PDB id
5a1v
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
79 pores, coloured by radius 79 pores, coloured by radius 79 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.47 56.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
2 1.84 1.84 67.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
3 1.94 1.94 72.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
4 1.93 1.93 75.8 -0.40 -0.80 3.4 0 0 0 0 2 0 1 0  
5 1.46 1.46 89.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
6 1.96 1.96 94.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
7 2.00 2.00 94.2 -0.40 -0.80 3.4 0 7 4 3 14 4 1 3  
8 1.20 1.20 95.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
9 2.00 2.00 95.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
10 1.78 1.78 100.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
11 1.65 1.65 101.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
12 1.82 1.82 103.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
13 1.74 1.74 112.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
14 1.88 1.88 126.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
15 2.15 2.15 133.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
16 1.76 1.76 139.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
17 1.58 1.58 154.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
18 1.89 1.89 157.5 -0.40 -0.80 3.4 0 7 4 3 12 4 1 3  
19 1.91 1.91 162.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
20 1.73 1.73 166.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
21 2.15 2.15 168.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
22 1.97 1.97 173.3 -0.40 -0.80 3.4 0 7 5 7 16 3 2 2  
23 1.78 1.78 175.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
24 1.70 1.70 177.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
25 1.39 1.39 26.6 -0.40 -0.80 3.4 0 2 0 1 10 2 0 1  
26 2.85 2.85 30.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
27 1.90 1.90 31.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
28 1.84 1.84 36.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
29 1.94 1.94 36.3 -0.40 -0.80 3.4 0 6 1 3 6 1 0 2  
30 1.20 1.20 37.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
31 1.99 1.99 41.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
32 1.93 1.93 44.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
33 1.65 1.65 53.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
34 2.20 2.20 66.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
35 1.95 1.95 72.6 -0.40 -0.80 3.4 0 2 3 1 6 2 1 1  
36 1.75 1.75 75.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
37 1.58 1.58 107.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
38 1.66 1.66 126.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
39 1.68 1.68 166.0 -0.40 -0.80 3.4 0 2 4 5 10 2 2 1  
40 1.70 1.70 224.4 -0.40 -0.80 3.4 0 6 4 10 14 3 2 2  
41 1.77 1.77 272.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
42 1.25 1.25 299.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
43 1.52 1.52 298.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
44 1.25 1.25 325.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
45 1.67 1.67 355.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
46 1.82 1.82 385.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
47 1.88 1.88 394.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
48 2.07 2.07 410.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
49 1.57 1.57 526.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
50 1.56 1.56 30.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
51 1.36 1.36 42.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
52 1.50 1.50 51.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
53 1.78 1.78 61.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
54 2.35 2.35 63.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
55 2.32 2.32 74.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
56 1.70 1.70 80.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
57 1.46 1.46 89.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
58 1.70 1.70 90.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
59 1.42 1.42 95.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
60 1.78 1.78 100.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
61 1.84 1.84 102.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
62 1.78 1.78 110.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
63 1.63 1.63 115.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
64 1.62 1.62 119.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
65 1.73 1.73 129.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
66 1.78 1.78 170.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
67 1.90 1.90 208.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
68 1.62 1.62 217.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
69 1.55 1.55 240.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
70 1.61 1.61 250.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
71 1.80 1.80 265.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
72 1.64 1.64 274.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
73 1.43 1.43 35.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
74 1.44 1.44 33.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
75 1.46 1.46 39.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
76 1.93 1.93 54.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
77 1.47 1.47 29.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
78 1.43 1.43 35.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  
79 1.89 1.89 45.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer