PDBsum entry 5a1u Go to PDB code:  Pore analysis for: 5a1u calculated with MOLE 2.0 PDB id 5a1u Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.26 2.26 30.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   2 1.54 1.54 30.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   3 1.20 1.20 37.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   4 2.30 2.30 39.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   5 2.31 2.31 54.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   6 1.83 1.83 71.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   7 1.97 1.97 92.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   8 1.82 1.82 96.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   9 1.40 1.40 95.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   10 2.07 2.07 98.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   11 1.69 1.69 103.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   12 1.70 1.70 131.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   13 1.77 1.77 140.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   14 1.69 1.69 156.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   15 1.85 1.85 167.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   16 1.61 1.61 192.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   17 1.43 1.43 35.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.