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PDBsum entry 5wrc

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protein ligands metals links
Hydrolase PDB id
5wrc

 

 

 

 

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Contents
Protein chain
279 a.a.
Ligands
NO3
Metals
_PR ×2
Waters ×215
PDB id:
5wrc
Name: Hydrolase
Title: Crystal structure of proteinase k from engyodontium album
Structure: Proteinase k. Chain: a. Synonym: endopeptidase k,tritirachium alkaline proteinase. Engineered: yes
Source: Engyodontium album. Organism_taxid: 37998. Gene: prok. Expressed in: engyodontium album. Expression_system_taxid: 37998
Resolution:
1.50Å     R-factor:   0.177     R-free:   0.193
Authors: M.Sugahara,T.Nakane,M.Suzuki,T.Masuda,S.Inoue,K.Numata
Key ref: M.Sugahara et al. (2017). Hydroxyethyl cellulose matrix applied to serial crystallography. Sci Rep, 7, 703. PubMed id: 28386083
Date:
01-Dec-16     Release date:   29-Nov-17    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P06873  (PRTK_PARAQ) -  Proteinase K from Parengyodontium album
Seq:
Struc:
384 a.a.
279 a.a.*
Key:    PfamA domain  Secondary structure
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.3.4.21.64  - peptidase K.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Hydrolysis of keratin and of other proteins, with subtilisin-like specificity. Hydrolyzes peptides amides.

 

 
Sci Rep 7:703 (2017)
PubMed id: 28386083  
 
 
Hydroxyethyl cellulose matrix applied to serial crystallography.
M.Sugahara, T.Nakane, T.Masuda, M.Suzuki, S.Inoue, C.Song, R.Tanaka, T.Nakatsu, E.Mizohata, F.Yumoto, K.Tono, Y.Joti, T.Kameshima, T.Hatsui, M.Yabashi, O.Nureki, K.Numata, E.Nango, S.Iwata.
 
  ABSTRACT  
 
Serial femtosecond crystallography (SFX) allows structures of proteins to be determined at room temperature with minimal radiation damage. A highly viscous matrix acts as a crystal carrier for serial sample loading at a low flow rate that enables the determination of the structure, while requiring consumption of less than 1 mg of the sample. However, a reliable and versatile carrier matrix for a wide variety of protein samples is still elusive. Here we introduce a hydroxyethyl cellulose-matrix carrier, to determine the structure of three proteins. The de novo structure determination of proteinase K from single-wavelength anomalous diffraction (SAD) by utilizing the anomalous signal of the praseodymium atom was demonstrated using 3,000 diffraction images.
 

 

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