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PDBsum entry 5syn

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protein ligands Protein-protein interface(s) links
Hydrolase/hydrolase inhibitor PDB id
5syn

 

 

 

 

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Contents
Protein chains
223 a.a.
Ligands
71T ×4
EDO ×6
Waters ×310
PDB id:
5syn
Name: Hydrolase/hydrolase inhibitor
Title: Cocrystal structure of the human acyl protein thioesterase 2 with an isoform-selective inhibitor, ml349
Structure: Acyl-protein thioesterase 2. Chain: a, b, c, d. Synonym: apt-2,lysophospholipase ii,lysopla ii. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: lypla2, apt2. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.64Å     R-factor:   0.220     R-free:   0.250
Authors: J.A.Stuckey,K.J.Labby,J.L.Meagher,S.J.Won,B.R.Martin
Key ref: S.J.Won et al. (2016). Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2). Acs Chem Biol, 11, 3374-3382. PubMed id: 27748579 DOI: 10.1021/acschembio.6b00720
Date:
11-Aug-16     Release date:   26-Oct-16    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
O95372  (LYPA2_HUMAN) -  Acyl-protein thioesterase 2 from Homo sapiens
Seq:
Struc:
231 a.a.
223 a.a.
Key:    Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class 2: E.C.3.1.2.-  - ?????
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
   Enzyme class 3: E.C.3.1.2.22  - palmitoyl-protein hydrolase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: S-hexadecanoyl-L-cysteinyl-[protein] + H2O = L-cysteinyl-[protein] + hexadecanoate + H+
S-hexadecanoyl-L-cysteinyl-[protein]
+ H2O
= L-cysteinyl-[protein]
+ hexadecanoate
+ H(+)
Note, where more than one E.C. class is given (as above), each may correspond to a different protein domain or, in the case of polyprotein precursors, to a different mature protein.
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Key reference    
 
 
DOI no: 10.1021/acschembio.6b00720 Acs Chem Biol 11:3374-3382 (2016)
PubMed id: 27748579  
 
 
Molecular Mechanism for Isoform-Selective Inhibition of Acyl Protein Thioesterases 1 and 2 (APT1 and APT2).
S.J.Won, D.Davda, K.J.Labby, S.Y.Hwang, R.Pricer, J.D.Majmudar, K.A.Armacost, L.A.Rodriguez, C.L.Rodriguez, F.S.Chong, K.A.Torossian, J.Palakurthi, E.S.Hur, J.L.Meagher, C.L.Brooks, J.A.Stuckey, B.R.Martin.
 
  ABSTRACT  
 
No abstract given.

 

 

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