PDBsum entry 4zur

Tunnel analysis for: 4zur calculated with

MOLE 2.0

PDB id

4zur

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.58

1.94

23.4

-0.95

0.34

15.5

68

4

1

0

1

5

1

1

7XA 404 A

2

1.51

1.92

24.3

-0.88

0.41

15.5

70

5

1

0

1

5

1

1

7XA 404 B

3

1.41

1.53

24.3

-1.00

-0.19

11.3

82

2

2

2

4

2

1

0

4

1.42

1.55

25.2

-0.91

-0.17

8.7

80

3

1

2

3

2

1

0

5

1.38

1.54

27.2

-0.61

-0.09

6.0

79

1

2

3

3

2

2

0

6

1.38

1.52

25.1

-1.22

-0.24

9.6

83

3

1

3

3

2

1

0

GOL 406 B

7

1.40

2.36

16.8

0.25

0.43

5.5

73

0

2

0

4

3

0

0

8

1.46

2.34

17.7

-0.18

0.35

9.4

71

0

2

0

4

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.