PDBsum entry 4zuo

Tunnel analysis for: 4zuo calculated with

MOLE 2.0

PDB id

4zuo

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.56

1.93

23.9

-0.74

0.44

14.1

68

5

1

0

1

6

1

1

XS6 404 B

2

1.55

1.91

25.6

-0.98

0.30

14.5

68

5

1

0

1

6

1

1

XS6 404 A

3

1.40

1.56

24.6

-1.04

-0.25

11.1

82

2

2

2

4

2

1

0

4

1.39

1.55

28.2

-0.88

-0.12

8.7

79

2

3

3

3

2

2

0

GOL 405 B

5

1.36

1.51

24.8

-1.08

-0.19

11.0

82

2

2

2

4

2

1

0

6

1.43

2.40

15.3

0.15

0.47

7.8

73

0

2

0

4

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.