PDBsum entry 4zum

Tunnel analysis for: 4zum calculated with

MOLE 2.0

PDB id

4zum

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.64

1.73

24.7

-1.10

0.27

16.3

70

4

2

0

1

5

1

0

FKS 404 A

2

1.62

1.72

24.8

-1.15

0.26

16.9

72

5

2

0

1

5

1

0

FKS 404 B

3

1.37

1.87

25.1

-1.23

-0.30

10.2

83

3

2

3

3

2

1

0

GOL 407 B

4

1.37

1.85

26.9

-0.79

-0.23

4.8

82

1

2

4

3

2

2

0

GOL 407 B

5

1.43

1.56

24.6

-1.04

-0.17

10.9

80

3

2

2

3

2

1

0

6

1.40

1.56

25.7

-0.56

-0.08

5.8

79

2

2

3

3

2

2

0

7

1.35

2.41

17.4

-0.28

0.27

10.3

71

0

2

0

4

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.