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PDBsum entry 4ztf

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4ztf calculated with MOLE 2.0 PDB id
4ztf
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.10 1.38 43.2 0.65 0.50 3.4 77 1 1 3 8 5 3 0  
2 1.09 1.38 43.4 0.79 0.76 3.6 73 2 0 3 8 7 2 0  
3 1.05 3.19 45.4 0.87 0.59 3.1 77 1 1 3 8 5 3 0  
4 1.04 3.18 45.5 1.03 0.81 3.3 73 2 0 3 8 7 2 0  
5 1.44 1.52 15.8 -1.60 -0.62 13.0 84 2 0 6 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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