spacer
spacer

PDBsum entry 4zqc

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4zqc calculated with MOLE 2.0 PDB id
4zqc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.46 1.56 37.7 1.07 0.21 2.0 82 1 0 3 9 4 2 0  F6F 301 A F6F 302 A
2 1.46 1.56 42.3 0.86 0.15 4.7 80 1 3 2 9 4 2 0  F6F 301 A F6F 302 A
3 1.17 1.95 84.9 0.36 0.04 8.2 78 5 2 7 19 7 3 1  F6F 301 A F6F 302 A PLP 401 B F6F 402 B
4 1.23 1.23 16.3 -0.70 -0.68 8.9 93 1 1 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer