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PDBsum entry 4zpp

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4zpp calculated with MOLE 2.0 PDB id
4zpp
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.46 2.59 25.9 -1.08 -0.53 17.2 84 2 2 2 4 1 1 0  
2 1.50 1.50 60.1 0.03 -0.24 4.5 77 0 1 5 5 2 1 1  MAN 410 A
3 1.44 1.56 97.6 0.37 -0.06 7.2 76 2 3 5 14 2 2 1  MAN 410 A
4 1.38 1.37 26.4 0.98 0.12 6.1 80 0 1 3 5 2 1 0  
5 1.67 1.78 26.5 2.34 0.78 4.8 79 0 1 2 12 2 1 0  
6 1.32 1.89 26.7 3.13 0.90 0.8 79 0 0 1 13 2 0 0  
7 1.84 3.11 27.5 2.54 0.73 1.0 79 0 0 1 10 2 0 0  
8 1.01 1.01 28.3 1.50 0.13 1.7 82 0 0 1 5 1 2 0  
9 1.33 1.87 33.1 2.61 0.72 1.0 81 0 0 1 10 3 0 0  
10 1.40 2.76 27.0 2.60 0.92 0.8 83 0 0 4 10 2 0 0  
11 1.34 1.34 30.2 2.23 0.68 1.0 85 0 0 1 8 2 0 0  
12 1.23 1.43 30.5 2.24 0.60 1.5 81 1 0 0 7 2 1 0  
13 1.24 1.24 30.8 2.64 0.69 0.9 80 0 0 3 10 1 1 0  
14 1.23 1.43 31.2 2.56 0.85 2.6 82 1 0 4 10 2 0 0  
15 1.24 1.43 33.6 2.18 0.78 3.0 77 1 1 0 8 3 1 0  
16 1.47 2.62 33.9 2.51 0.84 2.2 78 0 1 3 12 2 1 0  
17 1.40 2.73 41.0 1.86 0.74 3.8 81 0 2 1 9 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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