spacer
spacer

PDBsum entry 4zol

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4zol calculated with MOLE 2.0 PDB id
4zol
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
16 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.70 1.93 25.7 -2.04 -0.15 32.2 79 6 4 1 3 1 0 0  
2 2.31 2.31 25.9 -0.57 -0.17 8.0 81 2 1 1 5 2 1 0  55Q 507 B
3 2.37 2.37 33.3 -2.02 -0.79 21.6 84 2 5 4 0 1 0 0  
4 1.24 1.93 49.7 -1.74 -0.54 14.4 83 5 3 5 3 0 4 0  
5 2.07 2.13 51.9 -1.44 -0.55 19.2 83 8 5 3 4 0 3 0  
6 1.65 1.95 53.0 -2.41 -0.40 35.1 80 10 7 0 4 1 1 0  
7 2.33 2.33 59.0 -1.53 -0.52 18.7 80 4 6 4 5 3 1 0  55Q 507 B
8 1.94 2.63 82.9 -1.58 -0.38 23.3 83 7 6 6 5 1 0 0  GOL 505 A GOL 402 F
9 1.85 2.62 84.0 -1.66 -0.53 22.6 84 10 5 4 5 1 1 0  
10 1.08 2.31 85.2 -2.05 -0.57 26.3 85 13 6 3 4 0 1 0  
11 2.05 2.83 46.7 -1.28 -0.37 18.0 85 3 4 3 3 0 2 0  
12 1.48 1.47 99.9 -0.63 -0.35 12.6 86 3 4 5 11 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer