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PDBsum entry 4z7v

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Immune system PDB id
4z7v
Contents
Protein chains
180 a.a.
172 a.a.
199 a.a.
243 a.a.
13 a.a.
Ligands
NAG-NAG-MAN-MAN-
FUC-FUC
NAG-FUC-NAG-FUC
NAG ×2
Waters ×335

References listed in PDB file
Key reference
Title Determinants of gliadin-Specific t cell selection in celiac disease.
Authors J.Petersen, J.Van bergen, K.L.Loh, Y.Kooy-Winkelaar, D.X.Beringer, A.Thompson, S.F.Bakker, C.J.Mulder, K.Ladell, J.E.Mclaren, D.A.Price, J.Rossjohn, H.H.Reid, F.Koning.
Ref. J Immunol, 2015, 194, 6112-6122. [DOI no: 10.4049/jimmunol.1500161]
PubMed id 25948817
Abstract
In HLA-DQ8-associated celiac disease (CD), the pathogenic T cell response is directed toward an immunodominant α-gliadin-derived peptide (DQ8-glia-α1). However, our knowledge of TCR gene usage within the primary intestinal tissue of HLA-DQ8 (+) CD patients is limited. We identified two populations of HLA-DQ8-glia-α1 tetramer(+) CD4(+) T cells that were essentially undetectable in biopsy samples from patients on a gluten-free diet but expanded rapidly and specifically after antigenic stimulation. Distinguished by expression of TRBV9, both T cell populations displayed biased clonotypic repertoires and reacted similarly against HLA-DQ8-glia-α1. In particular, TRBV9 paired most often with TRAV26-2, whereas the majority of TRBV9(-) TCRs used TRBV6-1 with no clear TRAV gene preference. Strikingly, both tetramer(+)/TRBV9(+) and tetramer(+)/TRBV9(-) T cells possessed a non-germline-encoded arginine residue in their CDR3α and CDR3β loops, respectively. Comparison of the crystal structures of three TRBV9(+) TCRs and a TRBV9(-) TCR revealed that, as a result of distinct TCR docking modes, the HLA-DQ8-glia-α1 contacts mediated by the CDR3-encoded arginine were almost identical between TRBV9(+) and TRBV9(-) TCRs. In all cases, this interaction centered on two hydrogen bonds with a specific serine residue in the bound peptide. Replacement of serine with alanine at this position abrogated TRBV9(+) and TRBV9(-) clonal T cell proliferation in response to HLA-DQ8-glia-α1. Gluten-specific memory CD4(+) T cells with structurally and functionally conserved TCRs therefore predominate in the disease-affected tissue of patients with HLA-DQ8-mediated CD.
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