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PDBsum entry 4z6f

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 4z6f calculated with MOLE 2.0 PDB id
4z6f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.20 28.9 -1.40 -0.23 22.4 81 4 1 1 1 2 0 0  DG 9 P DA 10 P DG 9 T DC 10 T DA 11 T DT 12 T
2 1.18 1.18 32.5 -1.42 -0.23 20.7 80 4 1 1 2 2 0 0  DG 7 P DC 8 P DG 9 P DA 10 P DG 9 T DC 10 T DT 12
T DC 13 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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