 |
PDBsum entry 4z6e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4z6e calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4z6e
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.25 |
1.25 |
34.7 |
-1.47 |
-0.51 |
20.9 |
82 |
|
4 |
5 |
1 |
3 |
2 |
0 |
0 |
|
MN 401 A 1FZ 402 A DA 10 P
|
 |
|
2 |
 |
1.26 |
1.26 |
40.7 |
-1.45 |
-0.50 |
22.1 |
88 |
4 |
5 |
1 |
5 |
1 |
0 |
0 |
MN 401 A 1FZ 402 A DA 10 P
|
|
3 |
 |
1.74 |
2.00 |
25.5 |
-1.14 |
-0.52 |
11.8 |
96 |
1 |
0 |
1 |
1 |
0 |
0 |
0 |
DT 6 P DG 7 P DC 8 P DG 9 P DG 9 T DC 10 T DA 11
T DT 12 T DC 13 T DA 14 T
|
 |
4 |
 |
1.86 |
2.11 |
25.9 |
-1.48 |
-0.57 |
11.3 |
90 |
2 |
0 |
2 |
2 |
0 |
0 |
0 |
DG 7 P DC 8 P DG 9 P DG 9 T DC 10 T DA 11 T DT 12
T DC 13 T
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program