spacer
spacer

PDBsum entry 4z66

Go to PDB code: 
Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4z66 calculated with MOLE 2.0 PDB id
4z66
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
21 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.96 3.96 25.2 -0.92 -0.75 9.7 77 2 0 0 0 0 0 0  DG 58 I DG 59 I DC 60 I DC 133 I DA 134 I DG 135
I DG 136 I DC 156 J DC 157 J DC 159 J DC 160 J DT
240 J
2 1.60 1.74 26.1 -0.88 -0.76 9.1 83 1 0 0 0 0 0 0  DA 57 I DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 63 I DG 136 I DC 237 J DT 238 J DT 239 J DT
240 J
3 1.49 1.49 30.6 -1.93 -0.56 18.9 73 3 0 0 0 0 2 0  DG 68 I DC 69 I DT 70 I DG 71 I DG 72 I DA 146 I
DT 147 I DG 226 J DC 227 J DT 228 J DG 229 J
4 2.78 2.94 31.9 -0.29 -0.51 5.2 92 2 0 4 1 0 0 0  DG 18 I DC 90 I DT 91 I DT 92 I DT 93 I DT 94 I
DC 196 J DT 199 J DC 200 J DA 202 J
5 1.60 1.63 33.0 -1.27 -0.48 17.9 93 3 0 2 2 0 0 0  DA 17 I DG 18 I DA 19 I DT 20 I DA 21 I DT 93 I
DT 278 J DG 279 J DC 280 J DA 281 J DG 282 J
6 1.30 1.39 36.3 -1.36 -0.53 18.6 80 3 0 0 2 0 1 0  DA 73 I DA 74 I DT 75 I DC 80 I DT 81 I DG 215 J
DC 216 J DT 217 J DG 218 J DG 219 J DA 220 J
7 1.19 1.18 37.4 -2.28 -0.58 25.8 79 4 0 0 1 0 1 0  DG 63 I DT 64 I DC 69 I DT 70 I DG 71 I DG 72 I
DG 226 J DC 227 J DT 228 J DG 229 J DA 230 J
8 1.63 1.67 39.3 -1.06 -0.74 11.5 80 2 1 0 0 0 1 0  DC 16 I DA 17 I DG 18 I DA 19 I DT 20 I DA 21 I
DT 94 I DG 205 J DT 278 J DG 279 J DC 280 J DA
281 J DG 282 J DG 283 J
9 1.60 1.63 41.4 -1.37 -0.53 16.6 91 4 1 3 1 0 0 0  DT 8 I DC 9 I DA 17 I DG 18 I DA 19 I DT 20 I DA
21 I DC 207 J DT 278 J DG 279 J DC 280 J DA 281 J
DG 282 J DG 283 J
10 2.60 2.62 42.0 -2.20 -0.61 26.9 79 5 2 0 1 1 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DT 34 I DT 38 I
DG 39 I DA 114 I DC 115 I DA 257 J DA 258 J DA
259 J DT 260 J DA 261 J DC 262 J
11 2.40 2.41 44.8 -1.88 -0.70 21.9 78 3 1 0 0 0 0 0  DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I
DG 135 I DG 136 I DA 154 J DT 228 J DA 231 J DC
232 J DT 240 J
12 1.15 1.15 46.5 -1.94 -0.56 19.9 78 6 0 0 1 0 2 0  DG 63 I DT 64 I DG 68 I DA 146 I DT 147 I DT 228
J DG 229 J DA 230 J
13 1.59 1.75 52.9 -1.01 -0.74 10.8 77 5 0 0 0 0 0 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DC 133 I
DA 134 I DG 135 I DG 136 I DC 156 J DC 157 J DC
160 J DC 237 J DT 238 J DT 239 J DT 240 J
14 2.23 2.23 53.8 -2.20 -0.67 25.9 76 6 1 0 0 0 0 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DC 133 I
DA 134 I DG 135 I DG 136 I DA 154 J DT 155 J DC
156 J DC 157 J DC 160 J DT 228 J DA 231 J DC 232 J
15 1.17 1.16 64.5 -1.90 -0.68 21.5 81 4 1 0 1 0 1 0  DG 58 I DG 59 I DC 60 I DA 61 I DT 62 I DC 69 I
DT 70 I DG 71 I DG 72 I DG 135 I DG 136 I DA 154
J DG 226 J DC 227 J DT 228 J DG 229 J DA 230 J DA
231 J DC 232 J DT 240 J
16 2.74 2.97 65.6 -1.56 -0.68 15.8 94 7 0 8 1 1 0 0  DG 39 I DC 49 I DA 114 I DG 135 I DG 136 I DA 164
J DG 165 J DA 175 J DA 176 J DT 240 J DT 241 J DA
250 J DG 251 J DT 252 J
17 2.73 2.66 72.6 -1.57 -0.73 18.5 92 6 2 5 1 1 0 0  DG 18 I DA 28 I DA 29 I DT 38 I DG 39 I DA 103 I
DA 114 I DC 115 I DG 186 J DC 196 J DA 261 J
18 1.19 1.25 79.3 -1.16 -0.60 11.6 75 6 1 2 0 1 1 0  DA 67 I DG 68 I DC 133 I DA 134 I DG 135 I DT 143
I DT 144 I DG 145 I DA 146 I DT 147 I DA 151 J DA
152 J DA 154 J DT 155 J DC 156 J DC 157 J DC 160 J
19 3.19 3.36 82.9 -1.96 -0.56 23.0 89 9 1 5 2 2 0 0  DG 18 I DA 28 I DA 29 I DA 30 I DG 31 I DT 32 I
DT 34 I DA 103 I DG 186 J DC 196 J DA 258 J DA
259 J DT 260 J DA 261 J DC 262 J
20 3.15 3.37 83.6 -2.22 -0.56 24.3 78 7 0 1 1 0 1 0  DT 8 I DC 9 I DC 10 I DT 75 I DG 206 J DC 207 J
DC 216 J DT 217 J DA 281 J DG 282 J DG 283 J DT
290 J DT 291 J DG 292 J DT 294 J
21 2.11 2.11 89.5 -1.66 -0.70 17.0 92 10 1 10 1 1 0 0  DG 39 I DC 49 I DA 114 I DC 133 I DA 134 I DG 135
I DC 156 J DC 157 J DC 160 J DG 165 J DA 175 J DA
176 J DT 240 J DA 250 J DG 251 J DT 252 J
22 1.39 1.39 92.9 -1.62 -0.65 16.9 75 12 1 2 0 0 3 0  DC 69 I DT 70 I DG 71 I DG 72 I DC 133 I DA 134 I
DG 135 I DT 143 I DT 144 I DG 145 I DC 156 J DC
157 J DC 160 J DG 226 J DC 227 J DT 228 J
23 2.42 2.42 104.5 -1.96 -0.66 22.2 90 10 2 8 1 1 0 0  DG 39 I DC 49 I DG 59 I DC 60 I DA 61 I DT 62 I
DG 63 I DA 114 I DG 135 I DG 136 I DA 154 J DG
165 J DA 175 J DA 176 J DA 231 J DC 232 J DT 240
J DA 250 J DG 251 J DT 252 J
24 2.35 2.88 107.6 -1.65 -0.45 18.1 86 14 2 12 3 6 3 0  DG 18 I DC 49 I DA 103 I DG 135 I DG 136 I DA 164
J DG 165 J DC 196 J DT 240 J DT 241 J DA 250 J
25 1.63 1.65 108.1 -1.60 -0.49 18.7 85 8 0 4 2 0 1 0  DC 9 I DC 10 I DA 17 I DG 18 I DA 19 I DT 20 I DA
21 I DT 75 I DC 216 J DT 217 J DT 278 J DG 279 J
DC 280 J DA 281 J DT 290 J DT 291 J DG 292 J DT
294 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer