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PDBsum entry 4z5t

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4z5t calculated with MOLE 2.0 PDB id
4z5t
Pores calculated on whole structure Pores calculated excluding ligands

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24 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.29 25.3 -1.26 -0.68 12.9 77 2 0 0 0 0 1 0  DG 63 I DT 64 I DT 65 I DC 66 I DA 67 I DT 143 I
DG 144 I DA 151 J DT 152 J DA 153 J DC 230 J DA
231 J DT 232 J
2 2.79 2.89 29.4 -2.09 -0.64 19.7 85 2 0 2 0 1 0 0  DC 9 I DC 10 I DT 74 I DC 206 J DT 216 J DA 279 J
DG 280 J DT 288 J DT 289 J DG 290 J
3 2.01 2.01 33.5 -2.39 -0.65 25.1 76 3 1 1 0 0 1 0  DG 59 I DC 60 I DA 61 I DT 62 I DT 154 J DC 230 J
DA 231 J DT 232 J DT 236 J
4 1.29 1.56 35.0 -1.59 -0.48 16.3 75 3 0 0 1 0 2 0  DG 63 I DT 64 I DT 65 I DC 66 I DA 67 I DG 68 I
DC 69 I DT 70 I DG 144 I DG 227 J DA 228 J DC 230
J DA 231 J DT 232 J
5 3.37 3.37 35.0 -1.59 -0.73 13.3 90 4 0 4 0 0 0 0  DC 9 I DC 10 I DG 18 I DT 74 I DT 92 I DT 216 J D
A 279 J DG 280 J DT 288 J DT 289 J DG 290 J
6 3.24 3.26 40.2 -2.45 -0.36 27.7 76 6 0 0 0 1 0 0  DT 38 I DA 110 I DA 111 I DT 112 I DA 113 I DC
114 I DA 115 I DA 175 J DA 176 J DG 177 J DT 178
J DG 179 J DT 180 J DT 251 J
7 2.78 2.88 42.4 -1.86 -0.62 21.0 80 3 1 3 1 1 0 0  DG 18 I DT 92 I DC 195 J DC 206 J DG 280 J
8 1.35 1.35 54.5 -1.12 -0.50 12.7 70 4 0 0 1 1 1 0  DC 69 I DT 70 I DA 141 I DT 142 I DT 143 I DG 144
I DA 151 J DT 152 J DA 153 J DT 154 J DC 155 J DC
156 J DT 232 J
9 2.01 2.01 61.7 -0.69 -0.35 15.8 72 5 0 0 2 0 1 0  DG 59 I DC 60 I DT 62 I DG 63 I DG 71 I DA 72 I D
A 73 I DT 74 I DT 154 J DT 216 J DT 226 J DG 227
J DC 230 J DA 231 J DT 232 J
10 2.37 2.71 62.3 -1.39 -0.62 16.9 88 4 2 3 3 0 0 0  DA 28 I DT 38 I DC 44 I DT 45 I DG 46 I DA 102 I
DG 103 I DT 104 I DA 113 I DA 173 J DA 174 J DA
175 J DG 185 J DG 186 J DC 195 J DG 249 J DT 250
J DT 251 J DT 252 J DC 260 J
11 2.35 2.69 62.1 -1.34 -0.79 16.2 83 3 2 1 0 0 0 0  DC 26 I DA 27 I DA 28 I DT 38 I DC 44 I DT 45 I
DG 46 I DT 104 I DT 105 I DA 113 I DA 173 J DA
174 J DA 175 J DG 185 J DG 186 J DC 193 J DG 249
J DT 250 J DT 251 J DT 252 J DC 260 J DG 271 J
12 2.40 4.34 65.2 -1.75 -0.43 18.8 83 9 2 5 4 2 1 0  DC 195 J
13 1.83 4.48 66.8 -2.26 -0.34 25.9 81 11 3 4 2 2 0 0  DC 44 I DT 45 I DG 46 I DC 47 I DT 48 I DG 249 J
DT 250 J
14 1.76 1.76 67.5 -1.84 -0.67 23.3 82 4 2 1 1 0 0 0  DA 28 I DT 38 I DC 44 I DT 45 I DG 46 I DA 102 I
DG 103 I DT 104 I DA 113 I DA 173 J DA 174 J DA
175 J DG 185 J DG 186 J DT 194 J DC 195 J DG 249
J DT 250 J DT 251 J DT 252 J DC 260 J DG 271 J
15 1.83 4.49 72.2 -2.47 -0.50 27.6 81 12 3 3 1 2 0 0  DT 38 I DA 175 J DT 251 J
16 2.36 2.74 83.0 -1.48 -0.64 18.3 88 7 2 4 3 0 0 0  DA 28 I DT 38 I DA 102 I DG 103 I DT 104 I DA 113
I DA 175 J DG 185 J DG 186 J DC 195 J DT 251 J DC
260 J
17 2.36 2.68 82.8 -1.48 -0.78 18.0 84 6 2 2 0 0 0 0  DC 26 I DA 27 I DA 28 I DT 38 I DT 104 I DT 105 I
DA 113 I DA 175 J DG 185 J DG 186 J DC 193 J DT
251 J DC 260 J DG 271 J
18 1.63 1.65 84.6 -1.45 -0.70 15.6 86 6 1 4 1 0 0 0  DT 48 I DC 49 I DG 58 I DG 59 I DC 60 I DA 61 I
DT 62 I DA 133 I DG 134 I DA 165 J DA 175 J DC
235 J DT 236 J DT 237 J DT 238 J DT 239 J DG 249
J DT 251 J
19 1.88 1.89 93.1 -2.02 -0.65 25.4 82 8 2 1 1 0 0 0  DA 28 I DT 38 I DA 102 I DG 103 I DT 104 I DA 110
I DA 111 I DT 112 I DA 113 I DC 114 I DT 178 J DG
179 J DT 180 J DG 185 J DG 186 J DT 194 J DC 195
J DC 260 J DG 271 J
20 1.35 1.34 103.4 -1.65 -0.51 17.7 81 9 5 5 3 1 1 0  DA 141 I DT 142 I DT 143 I DG 144 I DA 151 J DT
152 J DA 153 J DT 154 J DC 155 J DC 156 J DA 157
J DT 232 J
21 1.34 1.35 114.3 -1.61 -0.51 17.3 83 10 2 6 4 1 1 0  DT 48 I DC 49 I DC 132 I DA 133 I DA 141 I DT 142
I DT 143 I DG 144 I DA 151 J DT 152 J DA 153 J DT
154 J DC 155 J DC 156 J DA 165 J DA 175 J DT 232
J DG 249 J DT 251 J
22 1.64 2.30 114.2 -1.57 -0.56 16.1 80 8 5 5 3 0 2 0  DC 69 I DT 70 I DA 141 I DT 142 I DT 143 I DC 156
J DA 157 J
23 1.94 3.27 131.3 -1.50 -0.54 16.7 82 11 2 6 4 0 2 0  DT 38 I DT 48 I DC 49 I DC 69 I DT 70 I DC 132 I
DA 133 I DA 141 I DT 142 I DT 143 I DC 156 J DA
165 J DA 175 J DG 249 J DT 251 J
24 1.35 1.35 139.0 -1.66 -0.44 16.3 79 14 3 6 5 3 2 0  DA 141 I DT 142 I DT 143 I DG 144 I DA 151 J DT
152 J DA 153 J DT 154 J DC 155 J DC 156 J DA 157
J DC 195 J DT 232 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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