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PDBsum entry 4z4i
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Tunnel analysis for: 4z4i calculated with  MOLE 2.0
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PDB id
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4z4i
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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14 tunnels,
coloured by
tunnel radius
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14 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.24 |
2.29 |
32.7 |
-1.31 |
-0.25 |
18.7 |
82 |
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3 |
1 |
1 |
2 |
1 |
0 |
0 |
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C 3 B A 4 B C 5 B C 1 D A 2 D A 3 D U 4 D G 5 D U
6 D MG 101 D
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2 |
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1.18 |
1.27 |
34.1 |
-1.93 |
-0.67 |
20.1 |
84 |
5 |
2 |
3 |
1 |
1 |
0 |
0 |
C 11 B
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3 |
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1.17 |
1.28 |
36.9 |
-1.51 |
-0.59 |
20.4 |
88 |
5 |
1 |
0 |
3 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B A 14 B G 15 B
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4 |
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1.16 |
1.27 |
37.3 |
-0.72 |
-0.38 |
16.1 |
88 |
4 |
1 |
0 |
3 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B A 14 B G 15 B U
16 B
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5 |
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1.23 |
1.88 |
39.7 |
-2.30 |
-0.52 |
28.3 |
85 |
6 |
2 |
3 |
2 |
1 |
0 |
0 |
C 10 B C 11 B
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6 |
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1.21 |
2.22 |
40.4 |
-1.05 |
-0.29 |
21.8 |
90 |
5 |
1 |
0 |
4 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B A 14 B G 15 B U
16 B
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7 |
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1.15 |
1.27 |
42.2 |
-1.63 |
-0.63 |
22.1 |
82 |
6 |
2 |
0 |
2 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B
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8 |
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1.16 |
1.28 |
44.9 |
-1.53 |
-0.67 |
19.1 |
87 |
4 |
2 |
0 |
2 |
0 |
0 |
0 |
U 8 B G 9 B C 10 B C 11 B C 12 B A 13 B A 2 D A 3
D
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9 |
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1.21 |
2.20 |
45.3 |
-1.88 |
-0.53 |
26.8 |
84 |
7 |
2 |
0 |
3 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B
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10 |
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1.17 |
1.27 |
47.4 |
-1.50 |
-0.39 |
25.5 |
85 |
8 |
4 |
2 |
3 |
1 |
0 |
0 |
U 7 B U 8 B G 9 B C 10 B C 11 B
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11 |
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1.23 |
1.89 |
48.0 |
-1.66 |
-0.61 |
22.0 |
89 |
5 |
2 |
0 |
3 |
0 |
0 |
0 |
U 8 B G 9 B C 10 B C 11 B C 12 B A 13 B A 2 D A 3
D
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12 |
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1.22 |
1.86 |
50.5 |
-1.71 |
-0.38 |
27.9 |
86 |
9 |
4 |
2 |
4 |
1 |
0 |
0 |
U 7 B U 8 B G 9 B C 10 B C 11 B
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13 |
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1.18 |
1.28 |
51.4 |
-1.65 |
-0.56 |
21.2 |
87 |
7 |
2 |
1 |
3 |
0 |
0 |
0 |
A 6 B U 7 B U 8 B G 9 B C 10 B C 11 B G 5 D U 6 D
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14 |
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1.22 |
1.87 |
54.5 |
-1.72 |
-0.51 |
23.1 |
89 |
8 |
2 |
1 |
4 |
0 |
0 |
0 |
A 6 B U 7 B U 8 B G 9 B C 10 B C 11 B G 5 D U 6 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program