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PDBsum entry 4z4e

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 4z4e calculated with MOLE 2.0 PDB id
4z4e
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.41 18.2 -0.06 -0.08 9.0 88 2 0 2 5 1 0 0  
2 1.35 2.70 15.7 -0.43 0.43 21.5 75 3 0 1 4 1 0 0  
3 1.12 1.77 16.5 0.81 0.08 11.4 64 0 1 0 5 0 1 0  
4 1.30 3.02 19.2 1.34 0.35 3.2 72 1 0 2 5 2 1 0  
5 1.25 1.47 22.8 1.54 0.73 7.1 68 1 1 1 5 3 1 0  
6 1.11 2.75 19.1 0.52 0.02 11.8 83 1 1 1 2 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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