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PDBsum entry 4z4d
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Tunnel analysis for: 4z4d calculated with  MOLE 2.0
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PDB id
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4z4d
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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9 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.05 |
1.23 |
30.6 |
-1.41 |
-0.69 |
14.8 |
85 |
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2 |
2 |
2 |
2 |
1 |
0 |
0 |
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C 11 B C 12 B A 13 B
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2 |
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1.05 |
1.23 |
32.7 |
-1.65 |
-0.61 |
17.2 |
88 |
5 |
2 |
4 |
2 |
1 |
0 |
0 |
C 11 B A 13 B
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3 |
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1.04 |
1.25 |
39.1 |
-1.15 |
-0.54 |
17.4 |
90 |
5 |
1 |
0 |
4 |
0 |
0 |
0 |
G 9 B C 10 B C 11 B C 12 B A 13 B A 14 B G 15 B
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4 |
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1.02 |
1.23 |
41.3 |
-1.94 |
-0.43 |
24.4 |
82 |
4 |
1 |
1 |
2 |
1 |
0 |
0 |
C 3 B A 4 B C 5 B C 1 D A 2 D A 3 D U 4 D G 5 D
MG 101 D
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5 |
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1.04 |
1.21 |
48.4 |
-1.41 |
-0.57 |
18.5 |
89 |
7 |
2 |
2 |
4 |
0 |
0 |
0 |
A 6 B U 7 B U 8 B G 9 B C 10 B C 11 B G 5 D U 6 D
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6 |
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1.03 |
1.20 |
51.6 |
-1.26 |
-0.40 |
22.0 |
84 |
8 |
3 |
2 |
4 |
1 |
0 |
1 |
IPA 907 A U 7 B U 8 B G 9 B C 10 B C 11 B
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7 |
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1.30 |
1.72 |
21.5 |
0.91 |
0.60 |
11.4 |
69 |
2 |
1 |
1 |
5 |
3 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program