spacer
spacer

PDBsum entry 4z20

Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4z20 calculated with MOLE 2.0 PDB id
4z20
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.77 1.77 66.7 -0.22 -0.43 9.7 75 3 1 2 2 2 0 0  DA 14 B DA 15 B DT 16 B DG 17 B DG 13 C DT 14 C
DC 15 C DA 16 C DT 4 E DA 5 E DC 6 E DA 7 E DC 23
F DC 24 F DC 25 F DC 26 F
2 1.50 2.66 73.4 -1.00 -0.63 15.3 83 2 4 4 3 0 1 0  DC 6 B DC 23 C DC 24 C DC 25 C GOL 101 C DA 3 F
DC 25 F DC 26 F
3 1.48 1.57 107.8 -0.76 -0.23 11.2 77 4 4 10 6 5 4 0  GOL 401 D DC 13 E DA 14 E DA 15 E DA 16 F DC 25 F
4 1.19 1.19 132.0 -0.17 -0.14 10.2 81 6 4 9 7 6 1 0  DT 4 B DA 5 B DC 6 B DA 7 B DT 19 C DG 20 C DT 21
C DC 23 C DC 25 C DC 13 E DA 14 E DA 15 E DA 16 F
5 1.87 1.87 159.9 -0.54 -0.43 11.2 78 9 2 4 5 3 2 0  DA 14 B DA 15 B DT 16 B DG 17 B DG 13 C DT 14 C
DC 15 C DA 16 C DC 6 E DA 7 E DC 23 F DC 24 F DC
25 F DC 26 F GOL 101 F
6 1.24 1.29 238.4 -0.86 -0.43 8.9 83 9 4 16 6 7 4 0  DT 4 B DA 5 B DC 6 B DA 7 B DA 14 B DA 15 B DT 16
B DG 17 B DG 13 C DT 14 C DC 15 C DA 16 C DT 19 C
DG 20 C DT 21 C DC 23 C DC 25 C GOL 401 D DT 4 E
DA 5 E DC 6 E DA 7 E DC 23 F DC 24 F DC 25 F DC
26 F GOL 101 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer