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PDBsum entry 4yir
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Pore analysis for: 4yir calculated with  MOLE 2.0
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PDB id
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4yir
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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4 pores,
coloured by radius |
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4 pores,
coloured by radius
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4 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.22 |
2.22 |
31.4 |
-1.30 |
-0.76 |
12.4 |
87 |
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3 |
2 |
2 |
0 |
0 |
0 |
0 |
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DC 13 W DC 14 W DC 15 W DC 16 W DG 18 W DG 11 Y
DG 12 Y DG 13 Y DA 14 Y DT 15 Y
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2 |
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2.23 |
2.23 |
36.2 |
-1.30 |
-0.79 |
12.6 |
89 |
3 |
2 |
2 |
0 |
0 |
0 |
0 |
DC 13 W DC 14 W DC 15 W DG 9 Y DG 11 Y DG 12 Y DG
13 Y DA 14 Y DT 15 Y
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3 |
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2.03 |
2.34 |
43.4 |
-1.84 |
-0.62 |
17.8 |
84 |
5 |
3 |
3 |
1 |
0 |
0 |
0 |
DT 2 W DG 3 W DC 13 W DC 14 W DT 17 Y DC 18 Y DG
19 Y DA 20 Y DG 21 Y
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4 |
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2.01 |
2.34 |
47.6 |
-1.57 |
-0.46 |
19.3 |
79 |
7 |
3 |
2 |
2 |
0 |
0 |
1 |
DT 2 W DG 3 W DC 13 W DC 14 W DT 17 Y DC 18 Y DG
19 Y
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program