PDBsum entry 4yga Go to PDB code:  Pore analysis for: 4yga calculated with MOLE 2.0 PDB id 4yga Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   16 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.80 2.21 37.8 -0.60 -0.21 18.0 85 4 4 2 5 1 0 0   2 1.55 3.00 47.5 -1.90 -0.57 30.1 84 6 5 1 3 0 1 0   3 1.36 1.40 51.6 0.51 0.14 13.7 74 5 4 1 10 2 0 0   4 1.75 1.74 57.2 -0.71 -0.27 10.0 80 2 2 4 4 3 0 0   5 1.38 2.49 57.5 0.37 0.14 14.8 75 6 4 2 8 3 0 0   6 1.49 1.82 66.6 -0.78 -0.17 10.4 78 5 2 7 5 2 2 1   7 1.24 3.22 66.8 0.53 0.16 13.6 76 6 6 2 12 5 0 0   8 3.69 4.13 82.6 -0.93 -0.36 15.3 82 6 8 5 5 3 1 0   9 1.56 1.61 99.2 -1.30 -0.44 16.7 81 6 7 8 5 0 1 1   10 1.35 1.36 109.3 -1.18 -0.47 20.9 81 9 4 4 4 1 0 0   11 1.66 2.53 118.5 -1.68 -0.55 26.4 80 12 13 2 8 2 0 0   12 1.37 2.55 126.5 -1.30 -0.49 14.5 83 7 5 10 8 5 0 0   13 1.34 2.90 132.8 -0.66 -0.23 16.7 78 8 8 6 11 6 2 0   14 1.37 2.55 133.6 -1.30 -0.54 13.4 85 6 5 10 5 6 1 0   15 1.82 2.43 134.9 -1.67 -0.62 20.4 82 9 10 6 4 3 1 0   16 1.72 1.93 140.1 -1.73 -0.51 27.0 83 16 15 3 13 1 0 0   17 1.74 1.74 140.0 -1.07 -0.44 12.6 82 6 4 11 6 4 3 0   18 1.62 2.00 171.8 -1.13 -0.41 19.2 82 13 13 7 15 6 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.