PDBsum entry 4ya1 Go to PDB code:  Pore analysis for: 4ya1 calculated with MOLE 2.0 PDB id 4ya1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 1.87 41.7 -1.33 -0.57 15.5 89 5 3 5 3 0 0 0   2 1.70 2.89 53.3 -1.05 -0.18 17.9 73 6 2 3 5 4 0 0   3 1.47 1.58 61.3 -2.52 -0.60 32.2 83 9 7 4 2 1 0 0   4 1.69 1.77 73.8 -0.58 -0.08 14.0 84 6 5 2 10 2 0 0   5 1.42 1.57 92.7 -2.82 -0.55 30.5 82 14 6 6 1 4 0 0   6 1.68 1.98 98.0 -2.30 -0.41 27.3 83 18 7 8 4 4 1 0   7 1.63 2.47 114.2 -2.25 -0.37 25.0 77 18 8 3 4 8 1 0   8 1.90 3.09 118.2 -2.72 -0.49 28.3 78 18 9 7 2 8 0 0   9 1.90 2.11 120.8 -2.10 -0.36 24.4 77 17 10 7 6 5 2 0   10 1.88 1.87 127.3 -2.02 -0.28 25.6 74 17 10 4 6 6 2 0   11 1.40 1.67 127.4 -2.50 -0.45 25.6 79 15 6 11 3 9 0 0   12 1.70 2.05 133.6 -2.21 -0.31 25.9 78 18 10 8 6 9 2 0   13 1.57 1.78 134.0 -1.32 -0.16 20.3 76 17 8 4 11 6 2 0   14 1.61 2.23 139.9 -1.60 -0.32 18.9 82 13 6 7 10 7 1 0   15 1.53 1.86 144.9 -2.32 -0.38 25.4 80 23 7 13 6 9 2 0   16 1.68 1.69 142.9 -1.97 -0.42 20.1 83 16 8 8 6 5 0 0   17 2.12 2.17 150.8 -1.98 -0.30 21.5 76 17 9 10 8 9 2 0   18 1.68 1.78 150.9 -1.13 -0.16 16.4 77 11 7 7 10 7 2 0   19 1.67 1.76 152.5 -1.30 -0.27 15.7 84 15 6 7 11 6 0 0   20 1.66 1.73 167.0 -1.93 -0.38 19.5 82 16 8 12 8 7 1 0   21 1.66 1.67 182.8 -1.37 -0.20 17.4 78 14 10 10 10 7 2 0   22 1.71 1.71 194.3 -2.12 -0.47 22.7 82 19 9 13 8 7 1 0   23 1.42 1.63 203.3 -1.67 -0.22 19.3 78 15 6 12 6 10 2 0   24 1.61 2.24 208.3 -1.57 -0.20 18.9 77 19 8 10 10 10 3 0   25 1.97 2.14 201.6 -2.74 -0.57 25.8 82 25 9 9 2 7 0 0   26 1.89 1.86 211.1 -1.92 -0.31 21.0 78 20 9 10 6 9 2 0   27 2.06 2.01 216.2 -1.34 -0.12 16.8 74 14 9 12 11 10 4 0   28 2.05 2.16 224.4 -1.86 -0.29 20.1 77 19 8 14 8 11 2 0   29 1.68 2.05 226.5 -1.70 -0.22 20.3 80 24 7 15 9 10 3 0   30 1.97 3.35 225.7 -2.63 -0.52 25.1 81 25 9 13 4 9 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.