PDBsum entry 4y2d

Pore analysis for: 4y2d calculated with

MOLE 2.0

PDB id

4y2d

Pores calculated on whole structure

Pores calculated excluding ligands

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visualization
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without HETATM:

7 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.97

2.86

27.7

-0.12

0.19

10.7

73

3

1

1

2

2

2

0

2

1.28

1.52

35.6

-0.63

-0.19

11.0

87

2

3

6

3

2

1

0

7DW 304 A

3

1.25

1.54

39.0

1.08

0.51

3.8

78

0

2

4

10

5

1

0

7DW 304 A

4

1.26

1.54

46.0

0.95

0.53

6.8

76

2

2

2

12

5

2

0

7DW 304 A

5

1.24

1.52

58.4

0.87

0.28

3.6

77

0

2

3

11

6

1

0

7DW 506 E

6

1.25

1.53

59.8

1.27

0.46

2.5

71

0

1

4

13

7

1

1

7DW 506 E

7

2.13

3.00

76.7

-1.75

-0.25

15.1

76

5

5

6

2

5

3

0

8

1.40

2.55

79.5

-0.57

0.01

11.4

77

4

5

3

7

4

1

2

9

1.20

2.71

85.2

0.04

0.11

6.9

79

2

4

8

10

6

3

0

NAG 301 A 7DW 304 A

10

1.22

2.71

94.8

-0.12

0.11

9.8

79

4

4

6

12

6

4

0

NAG 301 A 7DW 304 A

11

1.23

2.80

97.4

-0.33

-0.07

10.9

82

5

3

9

9

7

3

0

12

1.41

1.47

101.6

-0.29

0.01

15.2

77

6

5

3

9

3

2

2

13

1.37

1.78

121.7

-1.23

-0.43

12.8

83

4

5

11

5

6

1

0

NAG 504 E NAG 505 E

14

1.30

2.85

141.1

-0.46

-0.11

10.5

83

4

7

12

12

8

2

0

NAG 504 E NAG 505 E 7DW 506 E

15

1.25

2.90

176.7

0.24

0.23

8.3

79

7

5

9

20

11

5

0

NAG 505 E 7DW 506 E

16

2.13

2.18

41.6

-0.71

-0.37

11.2

92

3

2

5

4

0

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.