 |
PDBsum entry 4y2d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4y2d calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4y2d
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
13 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.34 |
2.43 |
23.3 |
0.28 |
-0.16 |
2.0 |
80 |
|
0 |
0 |
4 |
3 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.16 |
2.35 |
21.8 |
-2.02 |
0.06 |
24.4 |
69 |
3 |
1 |
2 |
1 |
4 |
0 |
0 |
|
|
3 |
 |
1.21 |
1.49 |
23.1 |
-1.67 |
-0.29 |
15.6 |
76 |
3 |
1 |
2 |
2 |
2 |
0 |
0 |
|
|
4 |
 |
1.17 |
2.38 |
25.5 |
-1.45 |
-0.17 |
19.2 |
70 |
4 |
1 |
1 |
1 |
4 |
0 |
0 |
|
|
5 |
 |
1.23 |
1.48 |
26.8 |
-1.36 |
-0.34 |
14.4 |
77 |
4 |
1 |
1 |
2 |
2 |
0 |
0 |
|
|
6 |
 |
1.21 |
1.37 |
18.1 |
0.35 |
-0.23 |
10.6 |
80 |
0 |
1 |
0 |
6 |
0 |
1 |
0 |
|
|
7 |
 |
1.21 |
1.37 |
24.3 |
-0.72 |
-0.39 |
16.1 |
86 |
1 |
1 |
2 |
5 |
0 |
1 |
0 |
|
|
8 |
 |
1.37 |
1.37 |
15.0 |
0.12 |
-0.18 |
4.0 |
90 |
0 |
2 |
3 |
1 |
1 |
0 |
0 |
|
 |
9 |
 |
1.64 |
1.64 |
15.5 |
-0.01 |
-0.22 |
5.1 |
85 |
0 |
2 |
2 |
1 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program