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PDBsum entry 4xzq
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4xzq calculated with MOLE 2.0 PDB id
4xzq
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.80 4.06 36.1 -1.51 -0.74 17.5 84 3 1 1 0 0 0 0  DC 49 I DG 59 I DC 60 I DG 135 I DG 136 I DA 154
J DG 165 J DT 240 J DT 241 J
2 1.40 1.40 36.7 -1.56 -0.69 17.6 86 3 0 1 0 0 0 0  DC 49 I DT 131 I DG 132 I DC 133 I DA 134 I DG
135 I DA 164 J DG 165 J DA 166 J DT 167 J DT 240
J DT 241 J
3 3.36 3.36 38.2 -1.81 -0.66 20.8 75 4 0 0 0 0 0 0  DG 39 I DG 40 I DA 42 I DA 43 I DC 44 I DT 45 I
DC 173 J DA 174 J DA 175 J DA 247 J DA 250 J DG
251 J DT 252 J DT 253 J DT 254 J
4 1.72 1.80 38.3 -0.89 -0.75 9.2 83 2 0 0 0 0 0 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DG 135 I
DG 136 I DA 154 J DC 236 J DC 237 J DT 238 J DT
239 J DT 240 J
5 1.69 1.73 38.8 -1.18 -0.47 13.1 75 3 0 0 1 0 2 0  DG 82 I DA 214 J DG 215 J DC 216 J DT 217 J DG
218 J DA 293 J DT 294 J
6 2.49 2.49 41.0 -0.55 -0.83 3.9 105 2 0 3 0 0 0 0  DC 47 I DC 49 I DC 50 I DT 124 I DA 125 I DG 165
J DC 173 J DT 241 J DG 251 J DT 252 J DT 253 J
7 3.14 3.15 42.6 -1.93 -0.48 22.2 91 5 1 5 1 1 0 0  DG 18 I DA 28 I DA 29 I DA 30 I DA 103 I DG 186 J
DC 196 J
8 1.85 2.01 42.9 -2.06 -0.71 24.6 78 3 1 0 0 0 0 0  DA 7 I DC 16 I DA 84 I DC 85 I DT 93 I DT 94 I DG
205 J DG 206 J DC 207 J DA 208 J DT 209 J DG 210
J DG 282 J DG 283 J
9 2.81 3.07 43.9 -1.68 -0.69 15.0 93 5 0 7 2 1 0 0  DA 42 I DA 43 I DC 44 I DT 45 I DC 49 I DC 50 I
DG 165 J DT 241 J DA 247 J DA 250 J
10 1.73 1.79 45.1 -1.16 -0.75 13.0 84 3 1 1 0 0 0 0  DC 49 I DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I
DG 135 I DG 165 J DC 236 J DC 237 J DT 238 J DT
239 J DT 240 J DT 241 J
11 1.40 1.40 50.3 -1.72 -0.73 18.8 78 4 1 1 0 0 0 0  DG 59 I DC 60 I DT 131 I DG 132 I DC 133 I DA 134
I DG 135 I DG 136 I DA 154 J DA 164 J DG 165 J DA
166 J DT 167 J DT 240 J
12 2.37 3.26 58.9 -1.78 -0.72 21.4 80 6 2 1 0 0 0 0  DA 29 I DA 30 I DT 38 I DG 39 I DG 40 I DA 42 I D
A 43 I DT 45 I DA 114 I DC 115 I DA 175 J DA 176
J DT 185 J DG 186 J DA 250 J DG 251 J DT 252 J DA
261 J DC 262 J
13 1.90 2.30 62.7 -1.56 -0.59 18.0 77 5 1 2 1 0 2 0  DG 59 I DC 60 I DA 134 I DG 135 I DG 136 I DT 143
I DT 144 I DG 145 I DT 147 I DA 148 J DA 154 J DT
155 J DC 156 J DC 157 J
14 1.87 2.01 62.9 -2.00 -0.70 23.7 89 5 2 3 1 0 0 0  DA 7 I DG 18 I DA 84 I DC 85 I DT 93 I DC 196 J
DG 206 J DC 207 J DA 208 J DT 209 J DG 210 J DG
282 J DG 283 J
15 1.46 1.46 65.9 -0.94 -0.75 9.8 91 2 1 0 0 0 1 0  DG 59 I DC 60 I DA 61 I DT 62 I DG 63 I DT 131 I
DG 132 I DC 133 I DA 134 I DG 135 I DG 136 I DA
164 J DG 165 J DA 166 J DT 167 J DC 236 J DC 237
J DT 238 J DT 239 J DT 240 J DT 241 J
16 2.54 2.72 71.2 -1.28 -0.45 13.6 79 5 0 0 2 1 0 0  DT 34 I DA 41 I DA 42 I DA 43 I DT 45 I DA 257 J
DA 258 J DA 259 J DT 260 J
17 1.93 2.29 73.5 -1.51 -0.66 15.7 83 6 2 5 1 0 2 0  DC 49 I DA 134 I DG 135 I DT 143 I DT 144 I DG
145 I DT 147 I DA 148 J DT 155 J DC 156 J DC 157
J DG 165 J DT 240 J DT 241 J
18 2.59 2.62 74.4 -2.39 -0.53 28.0 78 17 3 2 2 2 0 0  DA 28 I DA 29 I DA 30 I DG 186 J DC 262 J
19 2.52 2.95 78.0 -1.50 -0.73 16.3 92 6 2 8 1 1 0 0  DA 29 I DA 30 I DT 38 I DG 39 I DG 40 I DC 49 I
DC 50 I DA 114 I DC 115 I DG 165 J DA 175 J DA
176 J DT 185 J DG 186 J DT 241 J DA 250 J DG 251
J DT 252 J DA 261 J DC 262 J
20 2.57 2.62 78.9 -2.32 -0.48 26.4 82 15 4 5 3 2 0 0  DG 18 I DA 103 I DC 196 J
21 2.62 3.02 79.5 -1.64 -0.71 19.4 79 8 2 1 1 1 0 0  DA 29 I DA 30 I DG 31 I DT 32 I DT 34 I DT 38 I
DG 39 I DA 114 I DC 115 I DC 173 J DA 174 J DA
175 J DA 176 J DT 185 J DG 186 J DT 252 J DT 253
J DT 254 J DA 257 J DA 258 J DA 259 J DT 260 J DA
261 J DC 262 J DA 263 J
22 2.49 2.77 81.6 -2.10 -0.50 27.1 78 15 4 1 2 1 1 0  DG 39 I DC 173 J DA 174 J DA 175 J DA 176 J DT
252 J DT 253 J DT 254 J
23 1.31 1.39 82.8 -0.63 -0.31 14.3 81 7 0 2 6 0 3 0  ALY 515 A DT 70 I DG 71 I DT 75 I DC 80 I DT 81 I
DG 145 I DT 147 I DG 215 J DC 216 J DT 217 J DG
218 J DG 219 J DA 220 J DT 221 J
24 2.49 2.82 84.3 -2.07 -0.53 23.9 84 14 2 6 3 3 1 0  DC 49 I DC 50 I DG 165 J DT 241 J DA 250 J
25 1.47 1.47 88.7 -1.23 -0.51 15.6 87 6 2 5 2 0 3 0  DT 131 I DG 132 I DC 133 I DA 134 I DT 143 I DT
144 I DG 145 I DT 147 I DA 148 J DT 155 J DC 156
J DC 157 J DA 164 J DG 165 J DA 166 J DT 167 J
26 1.45 1.44 91.5 -0.59 -0.31 9.4 89 3 1 1 3 1 2 0  DC 47 I DC 49 I DT 124 I DA 125 I DG 132 I DC 133
I DT 167 J DA 168 J DC 169 J DC 173 J DG 251 J DT
252 J DT 253 J
27 1.27 1.35 95.0 -0.74 -0.32 16.1 83 8 0 2 7 0 1 0  ALY 515 A DG 63 I DT 64 I DT 70 I DG 71 I DT 75 I
DC 80 I DT 81 I DG 215 J DC 216 J DT 217 J DG 218
J DG 219 J DA 220 J DT 221 J DT 228 J DG 229 J DA
230 J
28 2.44 2.86 94.8 -1.75 -0.36 19.8 85 13 3 11 4 5 3 0  DG 18 I DC 49 I DC 50 I DA 103 I DG 165 J DC 196
J DT 241 J DA 250 J
29 1.40 1.42 100.7 -1.25 -0.39 14.7 90 6 1 6 5 2 2 0  DA 42 I DA 43 I DC 44 I DT 45 I DC 49 I DT 124 I
DA 125 I DG 132 I DC 133 I DT 167 J DA 168 J DC
169 J DA 247 J DA 250 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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