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PDBsum entry 4xyf

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protein ligands links
Transferase/transferase inhibitor PDB id
4xyf

 

 

 

 

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Contents
Protein chain
290 a.a.
Ligands
44X
Waters ×255
PDB id:
4xyf
Name: Transferase/transferase inhibitor
Title: Crystal structure of c-met in complex with (s)-5-(8-fluoro-3-(1-(3-(2- methoxyethoxy)quinolin-6-yl)ethyl)-[1,2,4]triazolo[4,3-a]pyridin-6- yl)-3-methylisoxazole
Structure: Hepatocyte growth factor receptor. Chain: a. Fragment: kinase domain (unp residues 1048-1351). Synonym: hgf receptor,hgf/sf receptor,proto-oncogenE C-met,scatter factor receptor,sf receptor,tyrosine-protein kinase met. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: met. Expressed in: trichoplusia ni. Expression_system_taxid: 7111.
Resolution:
1.85Å     R-factor:   0.188     R-free:   0.236
Authors: D.A.Whittington,A.M.Long
Key ref: E.A.Peterson et al. (2015). Discovery of potent and selective 8-fluorotriazolopyridine c-Met inhibitors. J Med Chem, 58, 2417-2430. PubMed id: 25699405 DOI: 10.1021/jm501913a
Date:
02-Feb-15     Release date:   11-Mar-15    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
P08581  (MET_HUMAN) -  Hepatocyte growth factor receptor from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1390 a.a.
290 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 Enzyme reactions 
   Enzyme class: E.C.2.7.10.1  - receptor protein-tyrosine kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H+
L-tyrosyl-[protein]
+ ATP
= O-phospho-L-tyrosyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    Added reference    
 
 
DOI no: 10.1021/jm501913a J Med Chem 58:2417-2430 (2015)
PubMed id: 25699405  
 
 
Discovery of potent and selective 8-fluorotriazolopyridine c-Met inhibitors.
E.A.Peterson, Y.Teffera, B.K.Albrecht, D.Bauer, S.F.Bellon, A.Boezio, C.Boezio, M.A.Broome, D.Choquette, K.W.Copeland, I.Dussault, R.Lewis, M.H.Lin, J.Lohman, J.Liu, M.Potashman, K.Rex, R.Shimanovich, D.A.Whittington, K.R.Vaida, J.C.Harmange.
 
  ABSTRACT  
 
The overexpression of c-Met and/or hepatocyte growth factor (HGF), the amplification of the MET gene, and mutations in the c-Met kinase domain can activate signaling pathways that contribute to cancer progression by enabling tumor cell proliferation, survival, invasion, and metastasis. Herein, we report the discovery of 8-fluorotriazolopyridines as inhibitors of c-Met activity. Optimization of the 8-fluorotriazolopyridine scaffold through the combination of structure-based drug design, SAR studies, and metabolite identification provided potent (cellular IC50 < 10 nM), selective inhibitors of c-Met with desirable pharmacokinetic properties that demonstrate potent inhibition of HGF-mediated c-Met phosphorylation in a mouse liver pharmacodynamic model.
 

 

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