 |
PDBsum entry 4xvd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4xvd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4xvd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
1 pore,
coloured by radius |
|
5 pores,
coloured by radius
|
5 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.07 |
2.20 |
29.8 |
-0.80 |
0.30 |
11.2 |
66 |
|
3 |
0 |
3 |
3 |
5 |
1 |
0 |
|
NAP 401 A WDV 402 A
|
 |
|
2 |
 |
1.27 |
1.72 |
37.4 |
-1.30 |
0.20 |
12.0 |
71 |
5 |
0 |
3 |
3 |
5 |
1 |
0 |
NAP 401 B WDV 402 B
|
|
3 |
 |
2.67 |
2.67 |
46.9 |
-2.63 |
-0.53 |
31.0 |
82 |
8 |
4 |
3 |
2 |
1 |
0 |
0 |
|
|
4 |
 |
1.33 |
1.92 |
65.4 |
-1.55 |
0.15 |
18.1 |
73 |
8 |
0 |
5 |
4 |
6 |
2 |
0 |
WDV 402 A
|
 |
5 |
 |
1.34 |
1.87 |
69.1 |
-2.02 |
-0.10 |
19.3 |
76 |
9 |
0 |
6 |
3 |
6 |
1 |
0 |
NAP 401 A WDV 402 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program