 |
PDBsum entry 4xr7
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4xr7 calculated with MOLE 2.0
|
PDB id
|
|
|
|
4xr7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.06 |
2.30 |
42.7 |
1.73 |
0.82 |
5.5 |
62 |
 |
4 |
0 |
0 |
11 |
7 |
0 |
0 |
 |
|
 |
 |
2 |
 |
1.95 |
2.84 |
54.3 |
-1.69 |
-0.38 |
20.1 |
88 |
4 |
4 |
8 |
7 |
4 |
0 |
0 |
|
 |
3 |
 |
2.45 |
2.71 |
55.6 |
-1.30 |
-0.30 |
14.8 |
86 |
7 |
2 |
7 |
4 |
3 |
0 |
0 |
|
 |
4 |
 |
2.61 |
3.09 |
78.8 |
-1.80 |
-0.54 |
14.3 |
87 |
5 |
7 |
10 |
2 |
2 |
3 |
1 |
|
 |
5 |
 |
2.13 |
2.44 |
85.8 |
-1.29 |
-0.36 |
13.4 |
90 |
8 |
4 |
8 |
11 |
5 |
0 |
0 |
|
 |
6 |
 |
1.92 |
2.83 |
101.0 |
-1.44 |
-0.31 |
17.5 |
85 |
8 |
5 |
9 |
12 |
8 |
1 |
0 |
|
 |
7 |
 |
1.28 |
1.32 |
102.0 |
-0.34 |
0.15 |
12.4 |
81 |
4 |
5 |
7 |
9 |
4 |
1 |
0 |
|
 |
8 |
 |
1.98 |
2.82 |
114.4 |
-1.46 |
-0.53 |
15.4 |
94 |
9 |
7 |
15 |
11 |
1 |
1 |
0 |
|
 |
9 |
 |
1.14 |
1.28 |
123.8 |
-0.91 |
-0.28 |
13.7 |
81 |
9 |
6 |
11 |
13 |
5 |
2 |
1 |
|
 |
10 |
 |
1.14 |
1.28 |
124.4 |
-2.00 |
-0.43 |
19.9 |
80 |
4 |
11 |
12 |
3 |
7 |
2 |
1 |
|
 |
11 |
 |
2.10 |
2.25 |
136.7 |
-1.72 |
-0.38 |
13.4 |
79 |
8 |
9 |
13 |
6 |
9 |
5 |
0 |
|
 |
12 |
 |
2.33 |
2.32 |
139.4 |
-1.51 |
-0.38 |
14.6 |
80 |
10 |
10 |
12 |
9 |
11 |
3 |
0 |
|
 |
13 |
 |
2.12 |
3.36 |
157.1 |
-1.56 |
-0.28 |
16.4 |
76 |
12 |
10 |
12 |
10 |
10 |
4 |
1 |
|
 |
14 |
 |
2.19 |
2.32 |
155.7 |
-0.83 |
-0.17 |
15.8 |
82 |
8 |
9 |
9 |
15 |
1 |
5 |
0 |
|
 |
15 |
 |
1.79 |
1.80 |
187.3 |
-0.46 |
-0.18 |
14.5 |
87 |
9 |
14 |
14 |
20 |
1 |
3 |
2 |
|
 |
16 |
 |
1.38 |
1.37 |
195.0 |
-1.57 |
-0.39 |
17.1 |
84 |
19 |
13 |
21 |
14 |
6 |
2 |
1 |
|
 |
17 |
 |
2.06 |
2.10 |
201.7 |
-1.30 |
-0.26 |
14.9 |
78 |
12 |
10 |
11 |
16 |
8 |
7 |
0 |
|
 |
18 |
 |
1.29 |
1.29 |
204.6 |
-1.50 |
-0.14 |
17.0 |
78 |
9 |
15 |
15 |
6 |
15 |
6 |
0 |
|
 |
19 |
 |
1.49 |
1.48 |
212.9 |
-1.66 |
-0.50 |
18.2 |
88 |
21 |
12 |
20 |
12 |
2 |
4 |
2 |
|
 |
20 |
 |
1.20 |
1.23 |
220.8 |
-1.39 |
-0.14 |
19.1 |
79 |
15 |
14 |
16 |
9 |
15 |
4 |
0 |
|
 |
21 |
 |
1.20 |
1.28 |
221.2 |
-1.32 |
-0.10 |
16.0 |
78 |
14 |
11 |
16 |
8 |
19 |
5 |
0 |
|
 |
22 |
 |
1.39 |
1.44 |
227.9 |
-1.18 |
-0.40 |
15.9 |
84 |
23 |
12 |
22 |
16 |
8 |
2 |
0 |
|
 |
23 |
 |
1.20 |
1.47 |
233.6 |
-0.97 |
-0.40 |
14.5 |
85 |
20 |
8 |
20 |
16 |
4 |
3 |
1 |
|
 |
24 |
 |
1.62 |
1.69 |
252.9 |
-1.03 |
-0.04 |
12.7 |
79 |
13 |
11 |
18 |
16 |
18 |
6 |
0 |
|
 |
25 |
 |
1.23 |
1.36 |
260.9 |
-1.79 |
-0.41 |
18.9 |
84 |
20 |
19 |
24 |
9 |
9 |
4 |
1 |
|
 |
26 |
 |
1.61 |
2.57 |
258.3 |
-0.90 |
-0.15 |
12.7 |
84 |
13 |
12 |
20 |
15 |
12 |
6 |
0 |
|
 |
27 |
 |
1.62 |
1.68 |
284.8 |
-1.12 |
-0.05 |
14.7 |
78 |
10 |
15 |
17 |
16 |
11 |
10 |
0 |
|
 |
28 |
 |
1.42 |
1.45 |
293.9 |
-1.45 |
-0.41 |
17.5 |
84 |
24 |
18 |
26 |
11 |
11 |
4 |
0 |
|
 |
29 |
 |
1.48 |
1.46 |
316.4 |
-0.86 |
-0.09 |
14.6 |
81 |
11 |
20 |
21 |
21 |
11 |
8 |
2 |
|
 |
30 |
 |
1.20 |
1.44 |
472.7 |
-1.36 |
-0.30 |
15.9 |
83 |
28 |
25 |
43 |
24 |
15 |
10 |
2 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |