PDBsum entry 4xn7

Tunnel analysis for: 4xn7 calculated with

MOLE 2.0

PDB id

4xn7

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.55

2.49

51.5

-1.89

-0.43

25.9

80

6

3

3

4

1

2

0

GOL 927 A MLI 935 A

2

1.34

1.56

54.4

-0.96

-0.11

16.0

81

6

5

2

8

3

1

0

DPP 902 A GOL 908 A GOL 930 A GOL 933 A MLI 935 A

3

1.34

1.56

56.8

-1.27

-0.04

19.6

79

6

6

3

7

3

0

0

DPP 902 A GOL 908 A GOL 933 A MLI 935 A

4

1.34

1.60

57.4

-1.57

-0.16

21.6

75

5

5

2

5

4

2

0

DPP 902 A GOL 908 A GOL 927 A GOL 933 A MLI 935 A

5

1.33

1.60

57.7

-0.48

-0.03

12.9

84

5

6

3

9

3

0

0

DPP 902 A GOL 908 A GOL 926 A GOL 933 A GOL 934 A
MLI 935 A

6

1.58

1.62

60.2

-1.37

-0.40

22.6

86

7

4

3

7

0

1

0

GOL 930 A MLI 935 A

7

1.57

1.59

63.7

-1.62

-0.32

25.8

82

7

5

4

6

0

0

0

MLI 935 A

8

1.58

1.61

64.9

-0.85

-0.26

18.4

89

7

4

5

8

0

0

0

GOL 926 A GOL 934 A MLI 935 A

9

1.33

1.34

31.6

-2.42

-0.79

22.2

81

2

6

5

1

2

1

0

10

1.36

1.36

31.9

-2.55

-0.78

23.2

80

3

6

5

1

2

0

0

11

1.21

1.41

15.9

-0.97

-0.51

8.0

88

1

1

4

4

0

0

0

GOL 931 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.