PDBsum entry 4xl1

Pore analysis for: 4xl1 calculated with

MOLE 2.0

PDB id

4xl1

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

7 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.96

3.24

28.0

-1.30

-0.24

16.4

88

3

2

3

3

2

0

0

FUC 603 A

2

3.29

3.44

31.2

-1.20

-0.23

18.2

89

3

3

3

3

2

0

0

NAG 301 B FUC 603 D

3

1.99

2.79

33.8

-1.16

-0.36

14.3

79

3

3

3

2

2

2

1

BGC 604 A FUC 603 D

4

1.71

1.91

36.0

-0.93

-0.27

11.4

83

3

1

2

2

1

2

1

FUC 603 A NAG 302 B

5

1.79

1.89

44.5

-0.66

-0.17

12.5

75

3

4

2

4

3

2

1

BGC 604 A FUC 603 D

6

1.98

2.46

46.3

-1.14

-0.28

13.3

85

3

2

4

3

1

2

0

FUC 603 D NAG 301 E NAG 302 E

7

1.79

1.89

57.0

-0.79

-0.14

12.5

82

4

3

3

5

2

2

0

FUC 603 D NAG 301 E NAG 302 E

8

1.56

1.56

57.2

-1.07

-0.32

12.6

79

3

2

3

3

3

1

0

MLY 189 E MLY 190 E NAG 302 E

9

1.57

1.57

75.3

-1.06

-0.35

11.7

81

3

4

7

6

4

1

0

BGC 604 A MLY 189 E MLY 190 E

10

1.71

1.81

77.3

-0.78

-0.10

12.1

80

4

4

6

7

3

2

1

FUC 603 A BGC 604 D NAG 301 E NAG 302 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.