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PDBsum entry 4x9j
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Tunnel analysis for: 4x9j calculated with  MOLE 2.0
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PDB id
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4x9j
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.62 |
1.86 |
17.8 |
-0.89 |
-0.34 |
17.2 |
84 |
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4 |
1 |
1 |
1 |
1 |
0 |
0 |
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DG 6 B DG 7 B DG 8 B
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2 |
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1.16 |
1.44 |
22.1 |
-1.69 |
-0.36 |
24.4 |
85 |
4 |
1 |
2 |
1 |
2 |
0 |
0 |
DG 6 B DG 7 B DG 8 B DA 52 C 5CM 53 C
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3 |
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1.34 |
1.45 |
15.1 |
-1.58 |
-0.61 |
20.0 |
92 |
2 |
1 |
0 |
1 |
0 |
0 |
0 |
DG 2 B 5CM 3 B DG 4 B
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4 |
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1.36 |
1.50 |
15.3 |
-1.15 |
-0.59 |
16.5 |
89 |
3 |
1 |
0 |
1 |
0 |
0 |
0 |
DG 2 B 5CM 3 B
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5 |
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1.35 |
1.48 |
21.3 |
-2.69 |
-0.63 |
34.2 |
90 |
3 |
2 |
0 |
1 |
0 |
0 |
0 |
DG 2 B 5CM 3 B DA 58 C 5CM 59 C DG 60 C
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6 |
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1.34 |
1.46 |
22.2 |
-1.47 |
-0.59 |
21.1 |
84 |
4 |
1 |
0 |
1 |
1 |
0 |
0 |
DG 2 B 5CM 3 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program